Other packages > Find by keyword >

SSHAARP  

Searching Shared HLA Amino Acid Residue Prevalence
View on CRAN: Click here


Download and install SSHAARP package within the R console
Install from CRAN:
install.packages("SSHAARP")

Install from Github:
library("remotes")
install_github("cran/SSHAARP")

Install by package version:
library("remotes")
install_version("SSHAARP", "2.0.8")



Attach the package and use:
library("SSHAARP")
Maintained by
Livia Tran
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-04-27
Latest Update: 2025-06-18
Description:
Processes amino acid alignments produced by the 'IPD-IMGT/HLA (Immuno Polymorphism-ImMunoGeneTics/Human Leukocyte Antigen) Database' to identify user-defined amino acid residue motifs shared across HLA alleles, and calculates the frequencies of those motifs based on HLA allele frequency data. 'SSHAARP' (Searching Shared HLA Amino Acid Residue Prevalence) uses 'Generic Mapping Tools (GMT)' software and the 'GMT' R package to generate global frequency heat maps that illustrate the distribution of each user-defined map around the globe. 'SSHAARP' analyzes the allele frequency data described by Solberg et al. (2008) <doi:10.1016/j.humimm.2008.05.001>, a global set of 497 population samples from 185 published datasets, representing 66,800 individuals total.
How to cite:
Livia Tran (2020). SSHAARP: Searching Shared HLA Amino Acid Residue Prevalence. R package version 2.0.8, https://cran.r-project.org/web/packages/SSHAARP. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.0.0 (2020-04-27 19:10), 1.0.1 (2020-10-09 12:40), 1.1.0 (2021-09-17 10:30), 2.0.5 (2024-12-11 08:50)
Other packages that cited SSHAARP R package
View SSHAARP citation profile
Other R packages that SSHAARP depends, imports, suggests or enhances
Complete documentation for SSHAARP
Functions, R codes and Examples using the SSHAARP R package
Some associated functions: AA_atlas . BLAASD . IMGTprotalignments . PALM . checkMotif . dataSubset . findMotif . solberg_dataset . 
Some associated R codes: BLAASD.R . PALM.R . checkMotif.R . data.R . dataSubset.R . findMotif.R .  Full SSHAARP package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  
crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA