Other packages > Find by keyword >

SSHAARP  

Searching Shared HLA Amino Acid Residue Prevalence
View on CRAN: Click here


Download and install SSHAARP package within the R console
Install from CRAN:
install.packages("SSHAARP")

Install from Github:
library("remotes")
install_github("cran/SSHAARP")

Install by package version:
library("remotes")
install_version("SSHAARP", "2.0.8")



Attach the package and use:
library("SSHAARP")
Maintained by
Livia Tran
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-04-27
Latest Update: 2025-06-18
Description:
Processes amino acid alignments produced by the 'IPD-IMGT/HLA (Immuno Polymorphism-ImMunoGeneTics/Human Leukocyte Antigen) Database' to identify user-defined amino acid residue motifs shared across HLA alleles, and calculates the frequencies of those motifs based on HLA allele frequency data. 'SSHAARP' (Searching Shared HLA Amino Acid Residue Prevalence) uses 'Generic Mapping Tools (GMT)' software and the 'GMT' R package to generate global frequency heat maps that illustrate the distribution of each user-defined map around the globe. 'SSHAARP' analyzes the allele frequency data described by Solberg et al. (2008) <doi:10.1016/j.humimm.2008.05.001>, a global set of 497 population samples from 185 published datasets, representing 66,800 individuals total.
How to cite:
Livia Tran (2020). SSHAARP: Searching Shared HLA Amino Acid Residue Prevalence. R package version 2.0.8, https://cran.r-project.org/web/packages/SSHAARP. Accessed 04 Jun. 2026.
Previous versions and publish date:
1.0.0 (2020-04-27 19:10), 1.0.1 (2020-10-09 12:40), 1.1.0 (2021-09-17 10:30), 2.0.5 (2024-12-11 08:50)
Other packages that cited SSHAARP R package
View SSHAARP citation profile
Other R packages that SSHAARP depends, imports, suggests or enhances
Complete documentation for SSHAARP
Functions, R codes and Examples using the SSHAARP R package
Some associated functions: AA_atlas . BLAASD . IMGTprotalignments . PALM . checkMotif . dataSubset . findMotif . solberg_dataset . 
Some associated R codes: BLAASD.R . PALM.R . checkMotif.R . data.R . dataSubset.R . findMotif.R .  Full SSHAARP package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

golem  
A Framework for Robust Shiny Applications
An opinionated framework for building a production-ready 'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
AMPLE  
Shiny Apps to Support Capacity Building on Harvest Control Rules
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management. ...
Download / Learn more Package Citations See dependency  
crplyr  
A 'dplyr' Interface for Crunch
In order to facilitate analysis of datasets hosted on the Crunch data platform ...
Download / Learn more Package Citations See dependency  
phers  
Calculate Phenotype Risk Scores
Use phenotype risk scores based on linked clinical and genetic data to study Mendelian disease and ...
Download / Learn more Package Citations See dependency  
murphydiagram  
Murphy Diagrams for Forecast Comparisons
Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA