Other packages > Find by keyword >

SSHAARP  

Searching Shared HLA Amino Acid Residue Prevalence
View on CRAN: Click here


Download and install SSHAARP package within the R console
Install from CRAN:
install.packages("SSHAARP")

Install from Github:
library("remotes")
install_github("cran/SSHAARP")

Install by package version:
library("remotes")
install_version("SSHAARP", "2.0.8")



Attach the package and use:
library("SSHAARP")
Maintained by
Livia Tran
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-04-27
Latest Update: 2025-06-18
Description:
Processes amino acid alignments produced by the 'IPD-IMGT/HLA (Immuno Polymorphism-ImMunoGeneTics/Human Leukocyte Antigen) Database' to identify user-defined amino acid residue motifs shared across HLA alleles, and calculates the frequencies of those motifs based on HLA allele frequency data. 'SSHAARP' (Searching Shared HLA Amino Acid Residue Prevalence) uses 'Generic Mapping Tools (GMT)' software and the 'GMT' R package to generate global frequency heat maps that illustrate the distribution of each user-defined map around the globe. 'SSHAARP' analyzes the allele frequency data described by Solberg et al. (2008) <doi:10.1016/j.humimm.2008.05.001>, a global set of 497 population samples from 185 published datasets, representing 66,800 individuals total.
How to cite:
Livia Tran (2020). SSHAARP: Searching Shared HLA Amino Acid Residue Prevalence. R package version 2.0.8, https://cran.r-project.org/web/packages/SSHAARP. Accessed 05 Mar. 2026.
Previous versions and publish date:
1.0.0 (2020-04-27 19:10), 1.0.1 (2020-10-09 12:40), 1.1.0 (2021-09-17 10:30), 2.0.5 (2024-12-11 08:50)
Other packages that cited SSHAARP R package
View SSHAARP citation profile
Other R packages that SSHAARP depends, imports, suggests or enhances
Complete documentation for SSHAARP
Functions, R codes and Examples using the SSHAARP R package
Some associated functions: AA_atlas . BLAASD . IMGTprotalignments . PALM . checkMotif . dataSubset . findMotif . solberg_dataset . 
Some associated R codes: BLAASD.R . PALM.R . checkMotif.R . data.R . dataSubset.R . findMotif.R .  Full SSHAARP package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

neat  
Efficient Network Enrichment Analysis Test
Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in ...
Download / Learn more Package Citations See dependency  
pinp  
'pinp' is not 'PNAS'
A 'PNAS'-alike style for 'rmarkdown', derived from the 'Proceedings of the National Academy of Scie ...
Download / Learn more Package Citations See dependency  
ClimClass  
Climate Classification According to Several Indices
Classification of climate according to Koeppen - Geiger, of aridity indices, of continentality indi ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
diffIRT  
Diffusion IRT Models for Response and Response Time Data
Package to fit diffusion-based IRT models to response and response time data. Models are fit using ...
Download / Learn more Package Citations See dependency  
roccv  
ROC for Cross Validation Results
Cross validate large genetic data while specifying clinical variables that should always be in the m ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA