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SRTsim  

Simulator for Spatially Resolved Transcriptomics
View on CRAN: Click here


Download and install SRTsim package within the R console
Install from CRAN:
install.packages("SRTsim")

Install from Github:
library("remotes")
install_github("cran/SRTsim")

Install by package version:
library("remotes")
install_version("SRTsim", "0.99.6")



Attach the package and use:
library("SRTsim")
Maintained by
Jiaqiang Zhu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-24
Latest Update: 2023-01-13
Description:
An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.
How to cite:
Jiaqiang Zhu (2022). SRTsim: Simulator for Spatially Resolved Transcriptomics. R package version 0.99.6, https://cran.r-project.org/web/packages/SRTsim
Previous versions and publish date:
0.99.2 (2022-06-24 10:10), 0.99.3 (2022-11-21 00:00)
Other packages that cited SRTsim R package
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