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SRTsim
View on CRAN: Click
here
Download and install SRTsim package within the R console
Install from CRAN:
install.packages("SRTsim")
Install from Github:
library("remotes")
install_github("cran/SRTsim") Install by package version:
library("remotes")
install_version("SRTsim", "0.99.7") Attach the package and use:
library("SRTsim")
Maintained by
Jiaqiang Zhu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-24
Latest Update: 2024-08-21
Description:
An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.
How to cite:
Jiaqiang Zhu (2022). SRTsim: Simulator for Spatially Resolved Transcriptomics. R package version 0.99.7, https://cran.r-project.org/web/packages/SRTsim. Accessed 04 Jun. 2026.
Previous versions and publish date:
Other packages that cited SRTsim R package
View SRTsim citation profile
Other R packages that SRTsim depends,
imports, suggests or enhances
Complete documentation for SRTsim
Functions, R codes and Examples using
the SRTsim R package
Some associated functions: EstParam . SRTsim_shiny . Shiny2SRT . compareSRT . convert_grid . createSRT . exampleLIBD . fit_pos_optim . get_metrics_pd . get_stats_gene . get_stats_loc . metaParam . reGenCountshiny . refCounts . refcolData . refrowData . simCounts . simNewLocs . simcolData . simrowData . srtsim_cci_free . srtsim_cci_ref . srtsim_count . srtsim_count_affine . srtsim_fit . srtsim_newlocs . subsetSRT . toyData . toyShiny . visualize_gene . visualize_metrics .
Some associated R codes: SRTaffine.R . SRTcci.R . SRTcount.R . SRTfit.R . SRTmodels.R . SRTsim_class.R . body.R . compareSRT.R . createSRT.R . data.R . globals.R . reGenCountshiny.R . runapp.R . server.R . shiny2srt.R . sidebar.R . simSRTLocs.R . subsetSRT.R . ui.R . utilies_func.R . visualize_gene.R . visualize_metrics.R . Full SRTsim package functions and examples
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