Other packages > Find by keyword >

SRTsim  

Simulator for Spatially Resolved Transcriptomics
View on CRAN: Click here


Download and install SRTsim package within the R console
Install from CRAN:
install.packages("SRTsim")

Install from Github:
library("remotes")
install_github("cran/SRTsim")

Install by package version:
library("remotes")
install_version("SRTsim", "0.99.7")



Attach the package and use:
library("SRTsim")
Maintained by
Jiaqiang Zhu
[Scholar Profile | Author Map]
First Published: 2022-06-24
Latest Update: 2023-01-13
Description:
An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.
How to cite:
Jiaqiang Zhu (2022). SRTsim: Simulator for Spatially Resolved Transcriptomics. R package version 0.99.7, https://cran.r-project.org/web/packages/SRTsim. Accessed 05 May. 2025.
Previous versions and publish date:
0.99.2 (2022-06-24 10:10), 0.99.3 (2022-11-21 00:00), 0.99.6 (2023-01-13 16:20)
Other packages that cited SRTsim R package
View SRTsim citation profile
Other R packages that SRTsim depends, imports, suggests or enhances
Complete documentation for SRTsim
Downloads during the last 30 days
04/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/03Downloads for SRTsim024681012141618202224TrendBars

Today's Hot Picks in Authors and Packages

lifecourse  
Quantification of Lifecourse Fluidity
Provides in built datasets and three functions. These functions are mobility_index, nonStanTest and ...
Download / Learn more Package Citations See dependency  
pdqr  
Work with Custom Distribution Functions
Create, transform, and summarize custom random variables with distribution functions (analogues of ...
Download / Learn more Package Citations See dependency  
rsvd  
Randomized Singular Value Decomposition
Low-rank matrix decompositions are fundamental tools and widely used for data analysis, dimension r ...
Download / Learn more Package Citations See dependency  
cape  
Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice
Combined Analysis of Pleiotropy and Epistasis infers predictive networks between genetic variants a ...
Download / Learn more Package Citations See dependency  
BINCOR  
Estimate the Correlation Between Two Irregular Time Series
Estimate the correlation between two irregular time series that are not necessarily sampled on ident ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

24,187

R Packages

207,311

Dependencies

65,312

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA