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SPACO
View on CRAN: Click
here
Download and install SPACO package within the R console
Install from CRAN:
install.packages("SPACO")
Install from Github:
library("remotes")
install_github("cran/SPACO") Install by package version:
library("remotes")
install_version("SPACO", "1.0.3") Attach the package and use:
library("SPACO")
Maintained by
David Köhler
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-03-31
Latest Update: 2026-03-31
Description:
Spatial components offer tools for dimension reduction and spatially variable gene detection for high dimensional spatial transcriptomics data. Construction of a projection onto low-dimensional feature space of spatially dependent metagenes offers pre-processing to clustering, testing for spatial variability and denoising of spatial expression patterns. For more details, see Koehler et al. (2026) <doi:10.1093/bioinformatics/btag052>.
How to cite:
David Köhler (2026). SPACO: Spatial Component Analysis for Spatial Sequencing Data. R package version 1.0.3, https://cran.r-project.org/web/packages/SPACO. Accessed 24 Oct. 2026.
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