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SPACO  

Spatial Component Analysis for Spatial Sequencing Data
View on CRAN: Click here


Download and install SPACO package within the R console
Install from CRAN:
install.packages("SPACO")

Install from Github:
library("remotes")
install_github("cran/SPACO")

Install by package version:
library("remotes")
install_version("SPACO", "1.0.3")



Attach the package and use:
library("SPACO")
Maintained by
David Köhler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-03-31
Latest Update: 2026-03-31
Description:
Spatial components offer tools for dimension reduction and spatially variable gene detection for high dimensional spatial transcriptomics data. Construction of a projection onto low-dimensional feature space of spatially dependent metagenes offers pre-processing to clustering, testing for spatial variability and denoising of spatial expression patterns. For more details, see Koehler et al. (2026) <doi:10.1093/bioinformatics/btag052>.
How to cite:
David Köhler (2026). SPACO: Spatial Component Analysis for Spatial Sequencing Data. R package version 1.0.3, https://cran.r-project.org/web/packages/SPACO. Accessed 24 Oct. 2026.
Previous versions and publish date:
(2026-08-24 13:00), 1.0.0 (2026-03-31 12:00), 1.0.1 (2026-04-01 00:40), 1.0.2 (2026-07-06 14:20)
Other packages that cited SPACO R package
View SPACO citation profile
Other R packages that SPACO depends, imports, suggests or enhances
Complete documentation for SPACO
Functions, R codes and Examples using the SPACO R package
Full SPACO package functions and examples
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