Other packages > Find by keyword >

SPACO  

Spatial Component Analysis for Spatial Sequencing Data
View on CRAN: Click here


Download and install SPACO package within the R console
Install from CRAN:
install.packages("SPACO")

Install from Github:
library("remotes")
install_github("cran/SPACO")

Install by package version:
library("remotes")
install_version("SPACO", "1.0.1")



Attach the package and use:
library("SPACO")
Maintained by
David Köhler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-03-31
Latest Update: 2026-03-31
Description:
Spatial components offer tools for dimension reduction and spatially variable gene detection for high dimensional spatial transcriptomics data. Construction of a projection onto low-dimensional feature space of spatially dependent metagenes offers pre-processing to clustering, testing for spatial variability and denoising of spatial expression patterns. For more details, see Koehler et al. (2026) <doi:10.1093/bioinformatics/btag052>.
How to cite:
David Köhler (2026). SPACO: Spatial Component Analysis for Spatial Sequencing Data. R package version 1.0.1, https://cran.r-project.org/web/packages/SPACO. Accessed 21 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 1.0.0 (2026-03-31 12:00), 1.0.1 (2026-04-01 00:40)
Other packages that cited SPACO R package
View SPACO citation profile
Other R packages that SPACO depends, imports, suggests or enhances
Complete documentation for SPACO
Functions, R codes and Examples using the SPACO R package
Full SPACO package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

artfima  
ARTFIMA Model Estimation
Fit and simulate ARTFIMA. Theoretical autocovariance function and spectral density function for stat ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
preputils  
Utilities for Preparation of Data Analysis
Miscellaneous small utilities are provided to mitigate issues with messy, inconsistent or high dimen ...
Download / Learn more Package Citations See dependency  
potential  
Implementation of the Potential Model
Provides functions to compute the potential model as defined by Stewart (1941) ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,034

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA