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SNPkit  

S4 Tools for Reading and Organizing Genetic Data
View on CRAN: Click here


Download and install SNPkit package within the R console
Install from CRAN:
install.packages("SNPkit")

Install from Github:
library("remotes")
install_github("cran/SNPkit")

Install by package version:
library("remotes")
install_version("SNPkit", "0.1.0")



Attach the package and use:
library("SNPkit")
Maintained by
Vinícius Junqueira
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-26
Latest Update: 2026-06-26
Description:
Provides an integrated suite of tools for handling single nucleotide polymorphism (SNP) genotype data in large-scale genetic studies. Supports importing and merging genotype files, performing quality control on SNP markers and samples, and preparing data for downstream analyses using popular software such as 'FImpute' and 'PLINK'. Offers S4 classes and methods to efficiently encapsulate SNP data, along with utilities for generating genotype summary statistics and visualization. Additional functionalities include anticlustering approaches for batch effect control, automated script generation for external software, and streamlined workflows for large datasets commonly encountered in animal and plant breeding programs. Designed to facilitate reproducible and scalable SNP data analyses in quantitative and statistical genetics.
How to cite:
Vinícius Junqueira (2026). SNPkit: S4 Tools for Reading and Organizing Genetic Data. R package version 0.1.0, https://cran.r-project.org/web/packages/SNPkit. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-15 01:00), 0.1.0 (2026-06-26 11:40)
Other packages that cited SNPkit R package
View SNPkit citation profile
Other R packages that SNPkit depends, imports, suggests or enhances
Complete documentation for SNPkit
Functions, R codes and Examples using the SNPkit R package
Full SNPkit package functions and examples
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