R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
SNPfiltR
View on CRAN: Click
here
Download and install SNPfiltR package within the R console
Install from CRAN:
install.packages("SNPfiltR")
Install from Github:
library("remotes")
install_github("cran/SNPfiltR")
Install by package version:
library("remotes")
install_version("SNPfiltR", "1.0.1")
Attach the package and use:
library("SNPfiltR")
Maintained by
Devon DeRaad
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2021-10-28
Latest Update: 2023-03-17
Description:
Is designed to interactively and reproducibly visualize and filter SNP (single-nucleotide polymorphism) datasets. This R-based implementation of SNP and genotype filters facilitates an interactive and iterative SNP filtering pipeline, which can be documented reproducibly via Rmarkdown. 'SNPfiltR' contains functions for visualizing various quality and missing data metrics for a SNP dataset, and then filtering the dataset based on user specified cutoffs. All functions take 'vcfR' objects as input, which can easily be generated by reading standard vcf (variant call format) files into R using the R package 'vcfR' (Knaus and Grünwald) (<doi:10.1111/1755-0998.12549>). Each 'SNPfiltR' function can return a newly filtered vcfR object, which can then be written to a local directory in standard vcf format using the 'vcfR' package, for downstream population genetic and phylogenetic analyses.
How to cite:
Devon DeRaad (2021). SNPfiltR: Interactively Filter SNP Datasets. R package version 1.0.1, https://cran.r-project.org/web/packages/SNPfiltR. Accessed 11 Apr. 2025.
Previous versions and publish date:
Other packages that cited SNPfiltR R package
View SNPfiltR citation profile
Other R packages that SNPfiltR depends,
imports, suggests or enhances
Complete documentation for SNPfiltR
Functions, R codes and Examples using
the SNPfiltR R package
Some associated functions: SNPfiltR . assess_missing_data_pca . assess_missing_data_tsne . distance_thin . filter_allele_balance . filter_biallelic . hard_filter . max_depth . min_mac . missing_by_sample . missing_by_snp . popmap . vcfR.example .
Some associated R codes: SNPfiltR.R . assess_missing_data_pca.R . assess_missing_data_tsne.R . distance_thin.R . example_data.R . filter_allele_balance.R . filter_biallelic.R . hard_filter.R . max_depth.R . min_mac.R . missing_by_sample.R . missing_by_snp.R . zzz.R . Full SNPfiltR package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
GenAlgo
Defines classes and methods that can be used
to implement genetic algorithms for feature selection. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Kevin R. Coombes (view profile)
multIntTestFunc
Provides implementations of functions that can be used to
test multivariate integration routines. T ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Klaus Herrmann (view profile)
extrafrail
Provide estimation and data generation tools for some new multivariate frailty models.
This version ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Diego Gallardo (view profile)
Rwtss
Allows remote access to satellite image time
series provided by the web time series service (WTSS) ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Felipe Souza (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
24,012
R Packages
207,311
Dependencies
64,867
Author Associations
24,013
Publication Badges
