Other packages > Find by keyword >

SNPfiltR  

Interactively Filter SNP Datasets
View on CRAN: Click here


Download and install SNPfiltR package within the R console
Install from CRAN:
install.packages("SNPfiltR")

Install from Github:
library("remotes")
install_github("cran/SNPfiltR")

Install by package version:
library("remotes")
install_version("SNPfiltR", "1.0.7")



Attach the package and use:
library("SNPfiltR")
Maintained by
Devon DeRaad
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-10-28
Latest Update:
Description:
Is designed to interactively and reproducibly visualize and filter SNP (single-nucleotide polymorphism) datasets. This R-based implementation of SNP and genotype filters facilitates an interactive and iterative SNP filtering pipeline, which can be documented reproducibly via Rmarkdown. 'SNPfiltR' contains functions for visualizing various quality and missing data metrics for a SNP dataset, and then filtering the dataset based on user specified cutoffs. All functions take 'vcfR' objects as input, which can easily be generated by reading standard vcf (variant call format) files into R using the R package 'vcfR' (Knaus and Grünwald) (<doi:10.1111/1755-0998.12549>). Each 'SNPfiltR' function can return a newly filtered vcfR object, which can then be written to a local directory in standard vcf format using the 'vcfR' package, for downstream population genetic and phylogenetic analyses.
How to cite:
Devon DeRaad (2021). SNPfiltR: Interactively Filter SNP Datasets. R package version 1.0.7, https://cran.r-project.org/web/packages/SNPfiltR. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.1.0 (2021-10-28 20:50), 0.1.1 (2022-01-25 13:02), 1.0.0 (2022-04-16 02:32), 1.0.1 (2023-03-17 17:40)
Other packages that cited SNPfiltR R package
View SNPfiltR citation profile
Other R packages that SNPfiltR depends, imports, suggests or enhances
Complete documentation for SNPfiltR
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA