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SNPannotator  

Automated Functional Annotation of Genetic Variants and Linked Proxies
View on CRAN: Click here


Download and install SNPannotator package within the R console
Install from CRAN:
install.packages("SNPannotator")

Install from Github:
library("remotes")
install_github("cran/SNPannotator")

Install by package version:
library("remotes")
install_version("SNPannotator", "1.4.6")



Attach the package and use:
library("SNPannotator")
Maintained by
Alireza Ani
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-03-08
Latest Update: 2023-01-12
Description:
To investigate the functional characteristics of selected SNPs and their vicinity genomic region. Linked SNPs in moderate to high linkage disequilibrium (e.g. r2>0.50) with the corresponding index SNPs will be selected for further analysis.
How to cite:
Alireza Ani (2022). SNPannotator: Automated Functional Annotation of Genetic Variants and Linked Proxies. R package version 1.4.6, https://cran.r-project.org/web/packages/SNPannotator. Accessed 27 Jun. 2026.
Previous versions and publish date:
0.2.0.0 (2022-03-08 21:00), 0.2.2.0 (2022-04-27 21:40), 0.2.4.0 (2022-08-07 09:40), 0.2.5.0 (2022-08-15 16:00), 0.2.6.0 (2023-01-12 16:40), 1.4.0 (2025-11-16 11:10), 1.4.3 (2025-11-26 18:00), 1.4.6 (2026-01-08 14:10)
Other packages that cited SNPannotator R package
View SNPannotator citation profile
Other R packages that SNPannotator depends, imports, suggests or enhances
Complete documentation for SNPannotator
Functions, R codes and Examples using the SNPannotator R package
Some associated functions: LDlist . annotate . listDatabases . pingServer . releaseVersion . 
Some associated R codes: CADD.R . checkReturnedVariantData.R . codes.R . getGeneFile.R . getVariantData.R . getVariantLDs.R . inSilicoSeqPipeline.R . returnVariantDatatable.R . runPipelineOnlist.R . zzz.R .  Full SNPannotator package functions and examples
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