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SMITIDvisu
View on CRAN: Click
here
Download and install SMITIDvisu package within the R console
Install from CRAN:
install.packages("SMITIDvisu")
Install from Github:
library("remotes")
install_github("cran/SMITIDvisu") Install by package version:
library("remotes")
install_version("SMITIDvisu", "0.0.9") Attach the package and use:
library("SMITIDvisu")
Maintained by
Jean-Francois Rey
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-02-18
Latest Update: 2021-02-08
Description:
Visualisation tools for 'SMITIDstruct' package. Allow to visualize host timeline, transmission tree, index diversities and variant graph using 'HTMLwidgets'. It mainly using 'D3JS' javascript framework.
How to cite:
Jean-Francois Rey (2019). SMITIDvisu: Visualize Data for Host and Viral Population from 'SMITIDstruct' using 'HTMLwidgets'. R package version 0.0.9, https://cran.r-project.org/web/packages/SMITIDvisu. Accessed 22 Sep. 2026.
Previous versions and publish date:
Other packages that cited SMITIDvisu R package
View SMITIDvisu citation profile
Other R packages that SMITIDvisu depends,
imports, suggests or enhances
Complete documentation for SMITIDvisu
Functions, R codes and Examples using
the SMITIDvisu R package
Some associated functions: SMITIDvisu-package . SMITIDvisu-shiny . createRainbowColors . demo.SMITIDvisu.run . df2geojson . hostline . maptt . mapttProxy . mapttSelectHost . mstCompute . mstVariant . mstVariantProxy . st.dist113_2 . st.dist113_all . st.listTimeProp113 . st . st.prop113_2 . st.prop113_all . timeLine . timeLineProxy . transmissionTree . transmissionTreeProxy . tt.edges . tt.events . tt.nodes . updateTimeLine . updateTransmissionTree . updatemstVariant .
Some associated R codes: RcppExports.R . SMITIDvisu.R . data-format.R . demo.R . df2geojson.R . maptt.R . mapttProxy.R . mstVariant.R . mstVariantProxy.R . timeLine.R . timeLineProxy.R . tools.R . transmissionTree.R . transmissionTreeProxy.R . Full SMITIDvisu package functions and examples
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