Other packages > Find by keyword >

SMDIC  

Identification of Somatic Mutation-Driven Immune Cells
View on CRAN: Click here


Download and install SMDIC package within the R console
Install from CRAN:
install.packages("SMDIC")

Install from Github:
library("remotes")
install_github("cran/SMDIC")

Install by package version:
library("remotes")
install_version("SMDIC", "0.1.6")



Attach the package and use:
library("SMDIC")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-16
Latest Update: 2024-10-16
Description:
A computing tool is developed to automated identify somatic mutation-driven immune cells. The operation modes including: i) inferring the relative abundance matrix of tumor-infiltrating immune cells and integrating it with a particular gene mutation status, ii) detecting differential immune cells with respect to the gene mutation status and converting the abundance matrix of significant differential immune cell into two binary matrices (one for up-regulated and one for down-regulated), iii) identifying somatic mutation-driven immune cells by comparing the gene mutation status with each immune cell in the binary matrices across all samples, and iv) visualization of immune cell abundance of samples in different mutation status..
How to cite:
Junwei Han (2020). SMDIC: Identification of Somatic Mutation-Driven Immune Cells. R package version 0.1.6, https://cran.r-project.org/web/packages/SMDIC. Accessed 07 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:24), 0.1.0 (2020-06-16 13:00), 0.1.1 (2020-06-21 15:40), 0.1.2 (2020-07-05 09:50), 0.1.3 (2020-11-13 16:00), 0.1.4 (2023-08-29 13:20), 0.1.5 (2024-01-12 05:40)
Other packages that cited SMDIC R package
View SMDIC citation profile
Other R packages that SMDIC depends, imports, suggests or enhances
Complete documentation for SMDIC
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

modelwordcloud  
Model Word Clouds
Makes a word cloud of text, sized by the frequency of the word, and colored either by user-specified ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
enrichwith  
Methods to Enrich R Objects with Extra Components
Provides the "enrich" method to enrich list-like R objects with new, relevant components. The curren ...
Download / Learn more Package Citations See dependency  
bbricks  
Bayesian Methods and Graphical Model Structures for Statistical Modeling
A set of frequently used Bayesian parametric and nonparametric model structures, as well as a set of ...
Download / Learn more Package Citations See dependency  
BayesESS  
Determining Effective Sample Size
Determines effective sample size of a parametric prior distribution in Bayesian models. For a web-b ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA