Other packages > Find by keyword >

SMDIC  

Identification of Somatic Mutation-Driven Immune Cells
View on CRAN: Click here


Download and install SMDIC package within the R console
Install from CRAN:
install.packages("SMDIC")

Install from Github:
library("remotes")
install_github("cran/SMDIC")

Install by package version:
library("remotes")
install_version("SMDIC", "0.1.6")



Attach the package and use:
library("SMDIC")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-16
Latest Update: 2024-10-16
Description:
A computing tool is developed to automated identify somatic mutation-driven immune cells. The operation modes including: i) inferring the relative abundance matrix of tumor-infiltrating immune cells and integrating it with a particular gene mutation status, ii) detecting differential immune cells with respect to the gene mutation status and converting the abundance matrix of significant differential immune cell into two binary matrices (one for up-regulated and one for down-regulated), iii) identifying somatic mutation-driven immune cells by comparing the gene mutation status with each immune cell in the binary matrices across all samples, and iv) visualization of immune cell abundance of samples in different mutation status..
How to cite:
Junwei Han (2020). SMDIC: Identification of Somatic Mutation-Driven Immune Cells. R package version 0.1.6, https://cran.r-project.org/web/packages/SMDIC. Accessed 04 Jun. 2026.
Previous versions and publish date:
0.1.0 (2020-06-16 13:00), 0.1.1 (2020-06-21 15:40), 0.1.2 (2020-07-05 09:50), 0.1.3 (2020-11-13 16:00), 0.1.4 (2023-08-29 13:20), 0.1.5 (2024-01-12 05:40)
Other packages that cited SMDIC R package
View SMDIC citation profile
Other R packages that SMDIC depends, imports, suggests or enhances
Complete documentation for SMDIC
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

crplyr  
A 'dplyr' Interface for Crunch
In order to facilitate analysis of datasets hosted on the Crunch data platform ...
Download / Learn more Package Citations See dependency  
phers  
Calculate Phenotype Risk Scores
Use phenotype risk scores based on linked clinical and genetic data to study Mendelian disease and ...
Download / Learn more Package Citations See dependency  
golem  
A Framework for Robust Shiny Applications
An opinionated framework for building a production-ready 'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency  
AMPLE  
Shiny Apps to Support Capacity Building on Harvest Control Rules
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management. ...
Download / Learn more Package Citations See dependency  
murphydiagram  
Murphy Diagrams for Forecast Comparisons
Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency  
shinybusy  
Busy Indicators and Notifications for 'Shiny' Applications
Add indicators (spinner, progress bar, gif) in your 'shiny' applications to show the user that the ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA