Other packages > Find by keyword >

SMDIC  

Identification of Somatic Mutation-Driven Immune Cells
View on CRAN: Click here


Download and install SMDIC package within the R console
Install from CRAN:
install.packages("SMDIC")

Install from Github:
library("remotes")
install_github("cran/SMDIC")

Install by package version:
library("remotes")
install_version("SMDIC", "0.1.6")



Attach the package and use:
library("SMDIC")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-16
Latest Update: 2024-10-16
Description:
A computing tool is developed to automated identify somatic mutation-driven immune cells. The operation modes including: i) inferring the relative abundance matrix of tumor-infiltrating immune cells and integrating it with a particular gene mutation status, ii) detecting differential immune cells with respect to the gene mutation status and converting the abundance matrix of significant differential immune cell into two binary matrices (one for up-regulated and one for down-regulated), iii) identifying somatic mutation-driven immune cells by comparing the gene mutation status with each immune cell in the binary matrices across all samples, and iv) visualization of immune cell abundance of samples in different mutation status..
How to cite:
Junwei Han (2020). SMDIC: Identification of Somatic Mutation-Driven Immune Cells. R package version 0.1.6, https://cran.r-project.org/web/packages/SMDIC. Accessed 28 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:24), 0.1.0 (2020-06-16 13:00), 0.1.1 (2020-06-21 15:40), 0.1.2 (2020-07-05 09:50), 0.1.3 (2020-11-13 16:00), 0.1.4 (2023-08-29 13:20), 0.1.5 (2024-01-12 05:40)
Other packages that cited SMDIC R package
View SMDIC citation profile
Other R packages that SMDIC depends, imports, suggests or enhances
Complete documentation for SMDIC
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

msamp  
Estimate Sample Size to Detect Bacterial Contamination in a Product Lot
Estimates the sample size needed to detect microbial contamination in a lot with a user-specified d ...
Download / Learn more Package Citations See dependency  
NPHazardRate  
Nonparametric Hazard Rate Estimation
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformat ...
Download / Learn more Package Citations See dependency  
cats  
Cohort Platform Trial Simulation
Cohort plAtform Trial Simulation whereby every cohort consists of two arms, control and experimenta ...
Download / Learn more Package Citations See dependency  
ncdf4  
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA