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SMDIC
View on CRAN: Click
here
Download and install SMDIC package within the R console
Install from CRAN:
install.packages("SMDIC")
Install from Github:
library("remotes")
install_github("cran/SMDIC")
Install by package version:
library("remotes")
install_version("SMDIC", "0.1.6")
Attach the package and use:
library("SMDIC")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-16
Latest Update: 2024-01-12
Description:
A computing tool is developed to automated identify somatic mutation-driven immune cells. The operation modes including: i) inferring the relative abundance matrix of tumor-infiltrating immune cells and integrating it with a particular gene mutation status, ii) detecting differential immune cells with respect to the gene mutation status and converting the abundance matrix of significant differential immune cell into two binary matrices (one for up-regulated and one for down-regulated), iii) identifying somatic mutation-driven immune cells by comparing the gene mutation status with each immune cell in the binary matrices across all samples, and iv) visualization of immune cell abundance of samples in different mutation status..
How to cite:
Junwei Han (2020). SMDIC: Identification of Somatic Mutation-Driven Immune Cells. R package version 0.1.6, https://cran.r-project.org/web/packages/SMDIC. Accessed 29 Mar. 2025.
Previous versions and publish date:
Other packages that cited SMDIC R package
View SMDIC citation profile
Other R packages that SMDIC depends,
imports, suggests or enhances
Complete documentation for SMDIC
Functions, R codes and Examples using
the SMDIC R package
Some associated functions: GetExampleData . SMDIC-package . cell24 . cell64 . envData . exp2cell . gene2cellsummary . heatmapcell . immunelist . maf2matrix . mutcellsummary . mutcorcell . plotCoocMutex . plotwaterfall . survcell . xCell.data .
Some associated R codes: GetExampleData.R . SMDIC-package.R . data.R . exp2cell.R . getEnvironmentData.R . maf2matrix.R . mutcorcell.R . visualization.R . Full SMDIC package functions and examples
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