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SITH  

A Spatial Model of Intra-Tumor Heterogeneity
View on CRAN: Click here


Download and install SITH package within the R console
Install from CRAN:
install.packages("SITH")

Install from Github:
library("remotes")
install_github("cran/SITH")

Install by package version:
library("remotes")
install_version("SITH", "1.1.0")



Attach the package and use:
library("SITH")
Maintained by
Phillip B. Nicol
[Scholar Profile | Author Map]
First Published: 2020-07-01
Latest Update: 2021-01-05
Description:
Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) <doi:10.1038/nature14971>. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.
How to cite:
Phillip B. Nicol (2020). SITH: A Spatial Model of Intra-Tumor Heterogeneity. R package version 1.1.0, https://cran.r-project.org/web/packages/SITH. Accessed 28 Feb. 2025.
Previous versions and publish date:
1.0.0 (2020-07-01 11:30), 1.0.1 (2020-07-02 09:20)
Other packages that cited SITH R package
View SITH citation profile
Other R packages that SITH depends, imports, suggests or enhances
Complete documentation for SITH
Downloads during the last 30 days
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