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SITH
View on CRAN: Click
here
Download and install SITH package within the R console
Install from CRAN:
install.packages("SITH")
Install from Github:
library("remotes")
install_github("cran/SITH")
Install by package version:
library("remotes")
install_version("SITH", "1.1.0")
Attach the package and use:
library("SITH")
Maintained by
Phillip B. Nicol
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.SITH . https://github.com/phillipnicol/SITH/issues . https://github.com/phillipnicol/SITH . SITH results . SITH.pdf . Simulating spatial tumor growth with SITH . SITH_1.1.0.tar.gz . SITH_1.1.0.zip . SITH_1.1.0.zip . SITH_1.1.0.zip . SITH_1.1.0.tgz . SITH_1.1.0.tgz . SITH_1.1.0.tgz . SITH_1.1.0.tgz . SITH_1.1.0.tgz . SITH_1.1.0.tgz . SITH archive . https://CRAN.R-project.org/package=SITH .
First Published: 2020-07-01
Latest Update: 2021-01-05
Description:
Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) <doi:10.1038/nature14971>. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.
How to cite:
Phillip B. Nicol (2020). SITH: A Spatial Model of Intra-Tumor Heterogeneity. R package version 1.1.0, https://cran.r-project.org/web/packages/SITH. Accessed 28 Feb. 2025.
Other packages that cited SITH R package
View SITH citation profile
Other R packages that SITH depends,
imports, suggests or enhances
Complete documentation for SITH
Functions, R codes and Examples using
the SITH R package
Some associated functions: SITH-package . bulkSample . plotSlice . progressionChain . progressionDAG_from_igraph . randomBulkSamples . randomNeedles . randomSingleCells . simulateTumor . singleCell . spatialDistribution . visualizeTumor .
Some associated R codes: RcppExports.R . generateTumor.R . progDAG.R . sequencing.R . spatial.R . visualize.R . Full SITH package functions and examples
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