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SCORPIUS
View on CRAN: Click
here
Download and install SCORPIUS package within the R console
Install from CRAN:
install.packages("SCORPIUS")
Install from Github:
library("remotes")
install_github("cran/SCORPIUS")
Install by package version:
library("remotes")
install_version("SCORPIUS", "1.0.9")
Attach the package and use:
library("SCORPIUS")
Maintained by
Robrecht Cannoodt
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-09-15
Latest Update: 2023-08-07
Description:
An accurate and easy tool for performing linear trajectory inference on
single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS'
provides functions for discovering the most important genes with respect to
the reconstructed trajectory, as well as nice visualisation tools.
Cannoodt et al. (2016) .
How to cite:
Robrecht Cannoodt (2017). SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data. R package version 1.0.9, https://cran.r-project.org/web/packages/SCORPIUS. Accessed 30 Jan. 2025.
Previous versions and publish date:
Other packages that cited SCORPIUS R package
View SCORPIUS citation profile
Other R packages that SCORPIUS depends,
imports, suggests or enhances
Complete documentation for SCORPIUS
Functions, R codes and Examples using
the SCORPIUS R package
Some associated functions: SCORPIUS-package . draw_trajectory_heatmap . draw_trajectory_plot . extract_modules . gene_importances . generate_dataset . ginhoux . infer_initial_trajectory . infer_trajectory . reduce_dimensionality . reexports . reverse_trajectory . ti_scorpius . ti_scorpius_run_fun .
Some associated R codes: data.R . dimensionality_reduction.R . dummy_proofing.R . dynwrap_integration.R . extract_modules.R . gene_importances.R . package.R . plotting.R . scaling.R . trajectory_inference.R . Full SCORPIUS package functions and examples
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