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SATS  

Signature Analyzer for Targeted Sequencing (SATS)
View on CRAN: Click here


Download and install SATS package within the R console
Install from CRAN:
install.packages("SATS")

Install from Github:
library("remotes")
install_github("cran/SATS")

Install by package version:
library("remotes")
install_version("SATS", "1.0.6")



Attach the package and use:
library("SATS")
Maintained by
Bill Wheeler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-07-05
Latest Update: 2025-07-05
Description:
Performs mutational signature analysis for targeted sequenced tumors. Unlike the canonical analysis of mutational signatures, SATS factorizes the mutation counts matrix into a panel context matrix (measuring the size of the targeted sequenced genome for each tumor in the unit of million base pairs (Mb)), a signature profile matrix, and a signature activity matrix. SATS also calculates the expected number of mutations attributed by a signature, namely signature expectancy, for each targeted sequenced tumor. For more details see Lee et al. (2024) <doi:10.1101/2023.05.18.23290188>.
How to cite:
Bill Wheeler (2025). SATS: Signature Analyzer for Targeted Sequencing (SATS). R package version 1.0.6, https://cran.r-project.org/web/packages/SATS. Accessed 09 Mar. 2026.
Previous versions and publish date:
1.0.4 (2025-07-05 20:40), 1.0.6 (2025-08-18 14:40)
Other packages that cited SATS R package
View SATS citation profile
Other R packages that SATS depends, imports, suggests or enhances
Complete documentation for SATS
Functions, R codes and Examples using the SATS R package
Full SATS package functions and examples
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