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SAFEMCN  

Network Topology Parameter Analysis with Rarefaction
View on CRAN: Click here


Download and install SAFEMCN package within the R console
Install from CRAN:
install.packages("SAFEMCN")

Install from Github:
library("remotes")
install_github("cran/SAFEMCN")

Install by package version:
library("remotes")
install_version("SAFEMCN", "1.0.0")



Attach the package and use:
library("SAFEMCN")
Maintained by
Xiaotong Xu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-05-28
Latest Update: 2026-05-28
Description:
Calculate network topology parameters from Operational Taxonomic Unit (OTU) tables with customizable correlation thresholds, parallel processing options, and visualization capabilities including trend fitting, prediction of future sample sizes, and lag-1 autocorrelation (AR1) analysis. Methods are based on co-occurrence network construction via correlation thresholds and graph-theoretic metrics computed with 'igraph'.
How to cite:
Xiaotong Xu (2026). SAFEMCN: Network Topology Parameter Analysis with Rarefaction. R package version 1.0.0, https://cran.r-project.org/web/packages/SAFEMCN. Accessed 28 Jul. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for SAFEMCN
Functions, R codes and Examples using the SAFEMCN R package
Full SAFEMCN package functions and examples
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