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Rtropical
View on CRAN: Click
here
Download and install Rtropical package within the R console
Install from CRAN:
install.packages("Rtropical")
Install from Github:
library("remotes")
install_github("cran/Rtropical") Install by package version:
library("remotes")
install_version("Rtropical", "1.2.1") Attach the package and use:
library("Rtropical")
Maintained by
Houjie Wang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-11-09
Latest Update: 2021-11-09
Description:
Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) . Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) and Yoshida, R., Zhang, L. & Zhang, X. (2019) .
How to cite:
Houjie Wang (2021). Rtropical: Data Analysis Tools over Space of Phylogenetic Trees Using Tropical Geometry. R package version 1.2.1, https://cran.r-project.org/web/packages/Rtropical. Accessed 25 Jun. 2026.
Previous versions and publish date:
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Other R packages that Rtropical depends,
imports, suggests or enhances
Complete documentation for Rtropical
Functions, R codes and Examples using
the Rtropical R package
Some associated functions: all_trees . apicomplexa . as.matrix.multiPhylo . as.vector.phylo . assignment_finder . coef.cv.tropsvm . coef.tropsvm . cv.tropsvm . dets . linsp_to_poly . lungfish . plot.troppca . polytope_iso . predict.cv.tropsvm . predict.tropsvm . read.nexus.to.data.matrix . read.tree.to.data.matrix . sim_trees . summary.cv.tropsvm . tropFW . tropdet . troppca.linsp . troppca.linsp2poly . troppcaj . troppca.poly . tropproj.linsp . tropproj.poly . tropseg . tropsvm . tropsvm_helper .
Some associated R codes: all_trees.R . apicomplexa.R . as.matrix.multiPhylo.R . as.vector.phylo.R . assignment_finder.R . coef.cv.tropsvm.R . coef.tropsvm.R . cv.tropsvm.R . dets.R . linsp_to_poly.R . lungfish.R . plot.tropca.R . polytope_iso.R . predict.cv.tropsvm.R . predict.tropsvm.R . read.nexus.to.data.matrix.R . read.tree.to.data.matrix.R . sim_trees.R . summary.cv.tropsvm.R . tropFW.R . tropdet.R . troppca.linsp.R . troppca.linsp2poly.R . troppcaj.R . troppca.poly.R . troproj.linsp.R . troproj.poly.R . tropseg.R . tropsvm.R . tropsvm_helper.R . Full Rtropical package functions and examples
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