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Rtapas  

Random Tanglegram Partitions
View on CRAN: Click here


Download and install Rtapas package within the R console
Install from CRAN:
install.packages("Rtapas")

Install from Github:
library("remotes")
install_github("cran/Rtapas")

Install by package version:
library("remotes")
install_version("Rtapas", "1.2")



Attach the package and use:
library("Rtapas")
Maintained by
Mar Llaberia-Robledillo
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-14
Latest Update: 2022-09-28
Description:
Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See Llaberia-Robledillo et al. (2022, ).
How to cite:
Mar Llaberia-Robledillo (2022). Rtapas: Random Tanglegram Partitions. R package version 1.2, https://cran.r-project.org/web/packages/Rtapas. Accessed 03 Feb. 2025.
Previous versions and publish date:
0.9 (2022-06-14 12:40), 1.0 (2022-09-19 13:26), 1.1 (2022-09-29 01:20)
Other packages that cited Rtapas R package
View Rtapas citation profile
Other R packages that Rtapas depends, imports, suggests or enhances
Complete documentation for Rtapas
Functions, R codes and Examples using the Rtapas R package
Some associated functions: amph_trem . assoc_mat . geo_D . gini_ci . link_freq . linkf_CI . max_cong . max_incong . nuc_cp . one2one_f . paco_ss . paraF . prob_statistic . tangle_gram . trimHS_maxC . trimHS_maxI . 
Some associated R codes: amph_trem.R . assoc_mat.R . geo_D.R . gini_ci.R . link_freq.R . linkf_CI.R . max_cong.R . max_incong.R . nuc_cp.R . one2one_f.R . paco_ss.R . paraF.R . prob_statistic.R . tangle_gram.R . trimHS_maxC.R . trimHS_maxI.R .  Full Rtapas package functions and examples
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