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Rogue
View on CRAN: Click
here
Download and install Rogue package within the R console
Install from CRAN:
install.packages("Rogue")
Install from Github:
library("remotes")
install_github("cran/Rogue")
Install by package version:
library("remotes")
install_version("Rogue", "2.1.6")
Attach the package and use:
library("Rogue")
Maintained by
Martin R. Smith
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-07-01
Latest Update: 2023-03-20
Description:
Rogue ("wildcard") taxa are leaves with uncertain phylogenetic
position.
Their position may vary from tree to tree under inference methods that yield a
tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony).
The presence of rogue taxa in a tree set can potentially remove all
information from a consensus tree. The information content of a consensus
tree - a function of its resolution and branch support values - can often be
increased by removing rogue taxa.
'Rogue' provides an explicitly information-theoretic approach to rogue
detection (Smith 2022) ,
and an interface to 'RogueNaRok' (Aberer et al. 2013)
.
How to cite:
Martin R. Smith (2021). Rogue: Identify Rogue Taxa in Sets of Phylogenetic Trees. R package version 2.1.6, https://cran.r-project.org/web/packages/Rogue. Accessed 06 Nov. 2024.
Previous versions and publish date:
Other packages that cited Rogue R package
View Rogue citation profile
Other R packages that Rogue depends,
imports, suggests or enhances
Complete documentation for Rogue
Functions, R codes and Examples using
the Rogue R package
Some associated functions: GraphGeodesic . Rogue-package . RogueTaxa . TipInstability . TipVolatility .
Some associated R codes: Rogue-package.R . RogueTaxa.R . SPIC.R . stability.R . utilities.R . zz_RogueNaRok.R . zzz.R . Full Rogue package functions and examples
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