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Rgff  

R Utilities for GFF Files
View on CRAN: Click here


Download and install Rgff package within the R console
Install from CRAN:
install.packages("Rgff")

Install from Github:
library("remotes")
install_github("cran/Rgff")

Install by package version:
library("remotes")
install_version("Rgff", "0.1.6")



Attach the package and use:
library("Rgff")
Maintained by
Juan Antonio Garcia-Martin
[Scholar Profile | Author Map]
First Published: 2022-06-23
Latest Update: 2022-09-30
Description:
R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.
How to cite:
Juan Antonio Garcia-Martin (2022). Rgff: R Utilities for GFF Files. R package version 0.1.6, https://cran.r-project.org/web/packages/Rgff. Accessed 23 Apr. 2025.
Previous versions and publish date:
0.1.0 (2022-06-23 09:20), 0.1.1 (2022-06-25 00:40), 0.1.2 (2022-06-27 17:00), 0.1.3 (2022-07-21 15:30), 0.1.4 (2022-09-19 16:16), 0.1.5 (2022-09-23 12:10)
Other packages that cited Rgff R package
View Rgff citation profile
Other R packages that Rgff depends, imports, suggests or enhances
Complete documentation for Rgff
Functions, R codes and Examples using the Rgff R package
Some associated functions: check_gff . check_gff3 . check_gtf . get_features . get_pairs_from_gff . get_pairs_from_gff3 . get_pairs_from_gtf . gff3_to_paths . gff_stats . gff_stats_by_chr . gtf_to_gff3 . gtf_to_paths . pipe . plot_features . saf_from_gff . saf_from_gff3 . saf_from_paths . sort_gff . sort_gff3 . sort_gtf . 
Some associated R codes: Rgff.R . utils-pipe.R .  Full Rgff package functions and examples
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