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RevGadgets  

Visualization and Post-Processing of 'RevBayes' Analyses
View on CRAN: Click here


Download and install RevGadgets package within the R console
Install from CRAN:
install.packages("RevGadgets")

Install from Github:
library("remotes")
install_github("cran/RevGadgets")

Install by package version:
library("remotes")
install_version("RevGadgets", "1.2.1")



Attach the package and use:
library("RevGadgets")
Maintained by
Carrie Tribble
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-13
Latest Update: 2023-11-29
Description:
Processes and visualizes the output of complex phylogenetic analyses from the 'RevBayes' phylogenetic graphical modeling software.
How to cite:
Carrie Tribble (2021). RevGadgets: Visualization and Post-Processing of 'RevBayes' Analyses. R package version 1.2.1, https://cran.r-project.org/web/packages/RevGadgets. Accessed 21 Dec. 2024.
Previous versions and publish date:
1.0.0 (2021-09-13 13:40), 1.1.0 (2022-12-03 23:52), 1.1.1 (2023-05-25 09:40), 1.2.0 (2023-11-16 23:04)
Other packages that cited RevGadgets R package
View RevGadgets citation profile
Other R packages that RevGadgets depends, imports, suggests or enhances
Complete documentation for RevGadgets
Functions, R codes and Examples using the RevGadgets R package
Some associated functions: RevGadgets . calculateShiftBayesFactor . colFun . combineTraces . densiTreeWithBranchData . dropTip . geom_stepribbon . getMAP . matchNodes . plotAncStatesMAP . plotAncStatesPie . plotDivRates . plotDiversityOBDP . plotFBDTree . plotHiSSE . plotMassExtinctions . plotMuSSE . plotPostPredStats . plotTrace . plotTree . plotTreeFull . posteriorSamplesToParametricPrior . processAncStates . processBranchData . processDivRates . processPostPredStats . processSSE . readOBDP . readTrace . readTrees . removeBurnin . rerootPhylo . setMRFGlobalScaleHyperpriorNShifts . simulateMRF . summarizeTrace . 
Some associated R codes: PlotDiversityOBDP.R . RevGadgets.R . calculateShiftBayesFactor.R . colFun.R . combineTrace.R . densiTreeWithBranchData.R . dropTip.R . geomStepRibbon.R . getMAP.R . global.R . matchNodes.R . plotAncStatesMAP.R . plotAncStatesPie.R . plotDivRates.R . plotFBDTree.R . plotHiSSE.R . plotMassExtinctions.R . plotMuSSE.R . plotPostPredStats.R . plotTrace.R . plotTree.R . plotTreeFull.R . posteriorSamplesToParametricPrior.R . processAncStates.R . processBranchData.R . processDivRates.R . processPostPredStats.R . processSSE.R . readOBDP.R . readTrace.R . readTrees.R . removeBurnin.R . rerootPhylo.R . setMRFGlobalScaleHyperpriorNShifts.R . simulateMRF.R . summarizeTrace.R . utils.R .  Full RevGadgets package functions and examples
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