Other packages > Find by keyword >

RestoreNet  

Random-Effects Stochastic Reaction Networks
View on CRAN: Click here


Download and install RestoreNet package within the R console
Install from CRAN:
install.packages("RestoreNet")

Install from Github:
library("remotes")
install_github("cran/RestoreNet")

Install by package version:
library("remotes")
install_version("RestoreNet", "1.0.1")



Attach the package and use:
library("RestoreNet")
Maintained by
Luca Del Core
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-20
Latest Update: 2024-02-15
Description:
A random-effects stochastic model that allows quick detection of clonal dominance events from clonal tracking data collected in gene therapy studies. Starting from the Ito-type equation describing the dynamics of cells duplication, death and differentiation at clonal level, we first considered its local linear approximation as the base model. The parameters of the base model, which are inferred using a maximum likelihood approach, are assumed to be shared across the clones. Although this assumption makes inference easier, in some cases it can be too restrictive and does not take into account possible scenarios of clonal dominance. Therefore we extended the base model by introducing random effects for the clones. In this extended formulation the dynamic parameters are estimated using a tailor-made expectation maximization algorithm. Further details on the methods can be found in L. Del Core et al., (2022) .
How to cite:
Luca Del Core (2022). RestoreNet: Random-Effects Stochastic Reaction Networks. R package version 1.0.1, https://cran.r-project.org/web/packages/RestoreNet. Accessed 18 Sep. 2026.
Previous versions and publish date:
(2026-07-09 08:23), 1.0 (2022-09-20 12:46)
Other packages that cited RestoreNet R package
View RestoreNet citation profile
Other R packages that RestoreNet depends, imports, suggests or enhances
Complete documentation for RestoreNet
Functions, R codes and Examples using the RestoreNet R package
Some associated functions: BhattDist . KLDiv . VEuy . Y_RM . compile.h . condAIC . dBu . dD2 . dmvNorm . fit.null . fit.re . get.M . get.V . get.W . get.boxplots . get.dx . get.gnl . get.nl . get.rescaled . get.scatterpie . get.sim.tl . ldet . nQ . ngQ . norm2 . nullModelFitting . ny_u . relErr . rmvNorm . rndEffModelFitting . rndEffModelStats . tr . 
Some associated R codes: data.R . functions.R . importPackages.R .  Full RestoreNet package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  
hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  
data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  
downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA