Other packages > Find by keyword >

RestoreNet  

Random-Effects Stochastic Reaction Networks
View on CRAN: Click here


Download and install RestoreNet package within the R console
Install from CRAN:
install.packages("RestoreNet")

Install from Github:
library("remotes")
install_github("cran/RestoreNet")

Install by package version:
library("remotes")
install_version("RestoreNet", "1.0.1")



Attach the package and use:
library("RestoreNet")
Maintained by
Luca Del Core
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-20
Latest Update: 2024-02-15
Description:
A random-effects stochastic model that allows quick detection of clonal dominance events from clonal tracking data collected in gene therapy studies. Starting from the Ito-type equation describing the dynamics of cells duplication, death and differentiation at clonal level, we first considered its local linear approximation as the base model. The parameters of the base model, which are inferred using a maximum likelihood approach, are assumed to be shared across the clones. Although this assumption makes inference easier, in some cases it can be too restrictive and does not take into account possible scenarios of clonal dominance. Therefore we extended the base model by introducing random effects for the clones. In this extended formulation the dynamic parameters are estimated using a tailor-made expectation maximization algorithm. Further details on the methods can be found in L. Del Core et al., (2022) .
How to cite:
Luca Del Core (2022). RestoreNet: Random-Effects Stochastic Reaction Networks. R package version 1.0.1, https://cran.r-project.org/web/packages/RestoreNet. Accessed 06 Nov. 2024.
Previous versions and publish date:
1.0 (2022-09-20 12:46)
Other packages that cited RestoreNet R package
View RestoreNet citation profile
Other R packages that RestoreNet depends, imports, suggests or enhances
Complete documentation for RestoreNet
Functions, R codes and Examples using the RestoreNet R package
Some associated functions: BhattDist . KLDiv . VEuy . Y_RM . compile.h . condAIC . dBu . dD2 . dmvNorm . fit.null . fit.re . get.M . get.V . get.W . get.boxplots . get.dx . get.gnl . get.nl . get.rescaled . get.scatterpie . get.sim.tl . ldet . nQ . ngQ . norm2 . nullModelFitting . ny_u . relErr . rmvNorm . rndEffModelFitting . rndEffModelStats . tr . 
Some associated R codes: data.R . functions.R . importPackages.R .  Full RestoreNet package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

mailR  
A Utility to Send Emails from R
Interface to Apache Commons Email to send emails from R. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
maic  
Matching-Adjusted Indirect Comparison
A generalised workflow for generation of subject weights to be used in Matching-Adjusted Indirect C ...
Download / Learn more Package Citations See dependency  
equatiomatic  
Transform Models into 'LaTeX' Equations
The goal of equatiomatic is to reduce the painassociated with writing LaTeX formulas from fitted mod ...
Download / Learn more Package Citations See dependency  
ddp  
Desirable Dietary Pattern
The desirable Dietary Pattern (DDP)/ PPH score measures the variety of food consumption. The (weigh ...
Download / Learn more Package Citations See dependency  
memoise  
'Memoisation' of Functions
Cache the results of a function so that when you call it again with the same arguments it returns t ...
Download / Learn more Package Citations See dependency  

23,092

R Packages

198,677

Dependencies

62,675

Author Associations

23,089

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA