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Rediscover
View on CRAN: Click
here
Download and install Rediscover package within the R console
Install from CRAN:
install.packages("Rediscover")
Install from Github:
library("remotes")
install_github("cran/Rediscover")
Install by package version:
library("remotes")
install_version("Rediscover", "0.3.2")
Attach the package and use:
library("Rediscover")
Maintained by
Juan A. Ferrer-Bonsoms
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.Rediscover . Rediscover citation info . Rediscover results . Rediscover.pdf . Rediscover . Rediscover_0.3.2.tar.gz . Rediscover_0.3.2.zip . Rediscover_0.3.2.zip . Rediscover_0.3.2.zip . Rediscover_0.3.2.tgz . Rediscover_0.3.2.tgz . Rediscover_0.3.2.tgz . Rediscover_0.3.2.tgz . Rediscover archive . https://CRAN.R-project.org/package=Rediscover .
First Published: 2021-04-07
Latest Update: 2023-04-14
Description:
An optimized method for identifying mutually
exclusive genomic events. Its main contribution is a
statistical analysis based on the Poisson-Binomial
distribution that takes into account that some samples
are more mutated than others. See [Canisius, Sander, John WM Martens,
and Lodewyk FA Wessels. (2016) "A novel independence test for
somatic alterations in cancer shows that
biology drives mutual exclusivity but chance explains
most co-occurrence." Genome biology 17.1 : 1-17. ].
The mutations matrices are sparse matrices. The method developed takes
advantage of the advantages of this type of matrix to save
time and computing resources.
How to cite:
Juan A. Ferrer-Bonsoms (2021). Rediscover: Identify Mutually Exclusive Mutations. R package version 0.3.2, https://cran.r-project.org/web/packages/Rediscover. Accessed 22 Apr. 2025.
Previous versions and publish date:
Other packages that cited Rediscover R package
View Rediscover citation profile
Other R packages that Rediscover depends,
imports, suggests or enhances
Complete documentation for Rediscover
Functions, R codes and Examples using
the Rediscover R package
Some associated functions: AMP_COAD . A_Matrix . A_example . B_Matrix . B_example . InternalFunctions . PM_AMP_COAD . PM_COAD . PMatrix-class . TCGA_COAD . discoversomaticInteractions . getMutex . getMutexAB . getMutexGroup . getPM .
Some associated R codes: AuxFunctions.R . PMatrixClass.R . discoversomaticInteractions.R . getMutex.R . getMutexAB.R . getMutexGroup.R . getPM.R . Full Rediscover package functions and examples
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