Other packages > Find by keyword >

Rediscover  

Identify Mutually Exclusive Mutations
View on CRAN: Click here


Download and install Rediscover package within the R console
Install from CRAN:
install.packages("Rediscover")

Install from Github:
library("remotes")
install_github("cran/Rediscover")

Install by package version:
library("remotes")
install_version("Rediscover", "0.3.2")



Attach the package and use:
library("Rediscover")
Maintained by
Juan A. Ferrer-Bonsoms
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-07
Latest Update: 2023-04-14
Description:
An optimized method for identifying mutually exclusive genomic events. Its main contribution is a statistical analysis based on the Poisson-Binomial distribution that takes into account that some samples are more mutated than others. See [Canisius, Sander, John WM Martens, and Lodewyk FA Wessels. (2016) "A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence." Genome biology 17.1 : 1-17. ]. The mutations matrices are sparse matrices. The method developed takes advantage of the advantages of this type of matrix to save time and computing resources.
How to cite:
Juan A. Ferrer-Bonsoms (2021). Rediscover: Identify Mutually Exclusive Mutations. R package version 0.3.2, https://cran.r-project.org/web/packages/Rediscover. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.0 (2021-04-07 11:00), 0.2.0 (2021-07-08 18:00), 0.3.0 (2021-10-06 11:20), 0.3.1 (2023-02-12 23:40)
Other packages that cited Rediscover R package
View Rediscover citation profile
Other R packages that Rediscover depends, imports, suggests or enhances
Complete documentation for Rediscover
Functions, R codes and Examples using the Rediscover R package
Some associated functions: AMP_COAD . A_Matrix . A_example . B_Matrix . B_example . InternalFunctions . PM_AMP_COAD . PM_COAD . PMatrix-class . TCGA_COAD . discoversomaticInteractions . getMutex . getMutexAB . getMutexGroup . getPM . 
Some associated R codes: AuxFunctions.R . PMatrixClass.R . discoversomaticInteractions.R . getMutex.R . getMutexAB.R . getMutexGroup.R . getPM.R .  Full Rediscover package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA