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Rduckhts  

'DuckDB' High Throughput Sequencing File Formats Reader Extension
View on CRAN: Click here


Download and install Rduckhts package within the R console
Install from CRAN:
install.packages("Rduckhts")

Install from Github:
library("remotes")
install_github("cran/Rduckhts")

Install by package version:
library("remotes")
install_version("Rduckhts", "1.5.2-0.1.5")



Attach the package and use:
library("Rduckhts")
Maintained by
Sounkou Mahamane Toure
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-02-23
Latest Update: 2026-02-24
Description:
Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API <https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>.
How to cite:
Sounkou Mahamane Toure (2026). Rduckhts: 'DuckDB' High Throughput Sequencing File Formats Reader Extension. R package version 1.5.2-0.1.5, https://cran.r-project.org/web/packages/Rduckhts. Accessed 25 Oct. 2026.
Previous versions and publish date:
(2026-10-25 00:01), 0.1.2-0.1.4 (2026-02-23 10:00), 0.1.3-0.0.2 (2026-02-24 10:30), 1.1.4-0.0.1 (2026-03-31 15:40), 1.1.6-0.0.2 (2026-04-09 16:50), 1.2.1-0.1.0 (2026-05-07 21:02), 1.3.0-0.1.0 (2026-05-29 22:10), 1.4.0-0.1.0 (2026-07-10 07:40), 1.5.0-0.1.0 (2026-07-24 10:30), 1.5.1-0.1.3 (2026-07-28 10:10), 1.5.2-0.1.5 (2026-09-16 14:20), 2.0.0.0.1.9 (2026-10-20 12:00)
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Complete documentation for Rduckhts
Functions, R codes and Examples using the Rduckhts R package
Full Rduckhts package functions and examples
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