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RcppTskit  

'R' Access to the 'tskit C' API
View on CRAN: Click here


Download and install RcppTskit package within the R console
Install from CRAN:
install.packages("RcppTskit")

Install from Github:
library("remotes")
install_github("cran/RcppTskit")

Install by package version:
library("remotes")
install_version("RcppTskit", "0.2.0")



Attach the package and use:
library("RcppTskit")
Maintained by
Gregor Gorjanc
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-02-27
Latest Update: 2026-02-27
Description:
'Tskit' enables efficient storage, manipulation, and analysis of ancestral recombination graphs (ARGs) using succinct tree sequence encoding. The tree sequence encoding of an ARG is described in Wong et al. (2024) <doi:10.1093/genetics/iyae100>, while ‘tskit' project is described in Jeffrey et al. (2026) <doi:10.48550/arXiv.2602.09649>. See also <https://tskit.dev> for project news, documentation, and tutorials. ’Tskit' provides 'Python', 'C', and 'Rust' application programming interfaces (APIs). The 'Python' API can be called from 'R' via the 'reticulate' package to load and analyse tree sequences as described at <https://tskit.dev/tutorials/tskitr.html>. 'RcppTskit' provides 'R' access to the 'tskit C' API for cases where the 'reticulate' option is not optimal; for example, high-performance or low-level work with tree sequences. Currently, 'RcppTskit' provides a limited set of 'R' functions because the 'Python' API and 'reticulate' already covers most needs.
How to cite:
Gregor Gorjanc (2026). RcppTskit: 'R' Access to the 'tskit C' API. R package version 0.2.0, https://cran.r-project.org/web/packages/RcppTskit. Accessed 06 Aug. 2026.
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Complete documentation for RcppTskit
Functions, R codes and Examples using the RcppTskit R package
Full RcppTskit package functions and examples
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