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RcmdrPlugin.BiclustGUI
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Download and install RcmdrPlugin.BiclustGUI package within the R console
Install from CRAN:
install.packages("RcmdrPlugin.BiclustGUI")
Install from Github:
library("remotes")
install_github("cran/RcmdrPlugin.BiclustGUI")
Install by package version:
library("remotes")
install_version("RcmdrPlugin.BiclustGUI", "1.1.3.1")
Attach the package and use:
library("RcmdrPlugin.BiclustGUI")
Maintained by
De Troyer Ewoud
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-28
Latest Update: 2022-05-23
Description:
A plug-in for R Commander ('Rcmdr'). The package is a Graphical User Interface (GUI) in which several biclustering methods can be executed, followed by diagnostics and plots of the results. Further, the GUI also has the possibility to connect the methods to more general diagnostic packages for biclustering. Biclustering methods from 'biclust', 'fabia', 's4vd', 'iBBiG', 'isa2', 'BiBitR', 'rqubic' and 'BicARE' are implemented. Additionally, 'superbiclust' and 'BcDiag' are also implemented to be able to further investigate results. The GUI also provides a couple of extra utilities to export, save, search through and plot the results. 'RcmdrPlugin.BiclustGUI' also provides a very specific framework for biclustering in which new methods, diagnostics and plots can be added. Scripts were prepared so that R-package developers can freely design their own dialogs in the GUI which can then be added by the maintainer of 'RcmdrPlugin.BiclustGUI'. These scripts do not required any knowledge of 'tcltk' and 'Rcmdr' and are easy to fill in. (Note: rqubic currently requires manual installation through BiocManager::install('rqubic').)
How to cite:
De Troyer Ewoud (2016). RcmdrPlugin.BiclustGUI: 'Rcmdr' Plug-in GUI for Biclustering. R package version 1.1.3.1, https://cran.r-project.org/web/packages/RcmdrPlugin.BiclustGUI
Previous versions and publish date:
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Other R packages that RcmdrPlugin.BiclustGUI depends,
imports, suggests or enhances
Functions, R codes and Examples using
the RcmdrPlugin.BiclustGUI R package
Some associated functions: BiclustGUI . GUIfunctions . internals . scriptsinternals . windows .
Some associated R codes: BicARE_WIN.R . BicARE_biclustWIN.R . MAINTAINER_functions.R . MAINTAINER_transformation_functions.R . MaxBC_window.R . bcdiag_WIN.R . bcdiagwrite_WIN.R . bibit3WIN.R . bibitWIN.R . biclust_extraplotsWIN.R . bimaxWIN.R . ccWIN.R . clearresults_plotgrid_WIN.R . exportFURBY_WIN.R . exportFURBY_functions.R . exportTXT_WIN.R . extra_for_biclustGUI.R . extract_functions.R . extractbicluster_WIN.R . fabia_SPARSEWIN.R . fabia_biclustWIN.R . fabia_laplacepriorWIN.R . fabia_postprojectionWIN.R . fabia_sparsenessprojectionWIN.R . find_WIN.R . find_functions.R . heatmapJI_WIN.R . help_WIN.R . iBBiGWIN.R . image_WIN.R . image_functions.R . internal-objectcreating.R . internal.R . internals_otherpackages.R . isa2_defaultWIN.R . isa_extraplotsWIN.R . jaccardindex_WIN.R . justdoit2.R . newmethod_function.R . newtool_function.R . plaidWIN.R . questWIN.R . rqubic_WIN.R . s4vd_WIN.R . saveload_WIN.R . search_WIN.R . spectralWIN.R . ssvd_WIN.R . superbiclust_WIN.R . xmotifWIN.R . Full RcmdrPlugin.BiclustGUI package functions and examples
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