Other packages > Find by keyword >

Rarefy  

Rarefaction Methods
View on CRAN: Click here


Download and install Rarefy package within the R console
Install from CRAN:
install.packages("Rarefy")

Install from Github:
library("remotes")
install_github("cran/Rarefy")

Install by package version:
library("remotes")
install_version("Rarefy", "1.1.1")



Attach the package and use:
library("Rarefy")
Maintained by
Elisa Thouverai
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-27
Latest Update: 2023-08-29
Description:
Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) ; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W.,
How to cite:
Elisa Thouverai (2020). Rarefy: Rarefaction Methods. R package version 1.1.1, https://cran.r-project.org/web/packages/Rarefy. Accessed 16 Apr. 2025.
Previous versions and publish date:
1.0 (2020-05-27 12:30), 1.1.1 (2023-07-06 15:13), 1.1 (2021-03-12 00:10)
Other packages that cited Rarefy R package
View Rarefy citation profile
Other R packages that Rarefy depends, imports, suggests or enhances
Functions, R codes and Examples using the Rarefy R package
Some associated functions: directionalSAC . duneFVG . duneFVG.tr8 . duneFVG.xy . rao_permuted . rare_alpha . rare_beta . rare_phylo . rarexpected_fun . ser_functional . 
Some associated R codes: directionalSAC.R . rao_permuted.R . rare_alpha.R . rare_beta.R . rare_phylo.R . rarexpected_fun.R . ser_functional.R . ser_phylo.R .  Full Rarefy package functions and examples
Downloads during the last 30 days
03/2003/2103/2203/2804/0204/0404/0504/0604/0704/0804/12Downloads for Rarefy12345678910TrendBars

Today's Hot Picks in Authors and Packages

MM4LMM  
Inference of Linear Mixed Models Through MM Algorithm
The main function MMEst() performs (Restricted) Maximum Likelihood in a variance component mixed mod ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
datadictionary  
Create a Data Dictionary
Creates a data dictionary from any dataframe or tibble in your R environment. You can opt to add va ...
Download / Learn more Package Citations See dependency  
hkclustering  
Ensemble Clustering using K Means and Hierarchical Clustering
Implements an ensemble algorithm for clustering combining a k-means and a hierarchical clustering ap ...
Download / Learn more Package Citations See dependency  
apache.sedona  
R Interface for Apache Sedona
R interface for 'Apache Sedona' based on 'sparklyr' (). ...
Download / Learn more Package Citations See dependency  
MultiKink  
Estimation and Inference for Multi-Kink Quantile Regression
Estimation and inference for multiple kink quantile regression for longitudinal data and the i.i.d d ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,993

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA