Other packages > Find by keyword >

Rarefy  

Rarefaction Methods
View on CRAN: Click here


Download and install Rarefy package within the R console
Install from CRAN:
install.packages("Rarefy")

Install from Github:
library("remotes")
install_github("cran/Rarefy")

Install by package version:
library("remotes")
install_version("Rarefy", "1.1.1")



Attach the package and use:
library("Rarefy")
Maintained by
Elisa Thouverai
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-27
Latest Update:
Description:
Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) ; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W.,
How to cite:
Elisa Thouverai (2020). Rarefy: Rarefaction Methods. R package version 1.1.1, https://cran.r-project.org/web/packages/Rarefy. Accessed 29 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:21), 1.0 (2020-05-27 12:30), 1.1.1 (2023-07-06 15:13), 1.1 (2021-03-12 00:10)
Other packages that cited Rarefy R package
View Rarefy citation profile
Other R packages that Rarefy depends, imports, suggests or enhances
Functions, R codes and Examples using the Rarefy R package
Some associated functions: directionalSAC . duneFVG . duneFVG.tr8 . duneFVG.xy . rao_permuted . rare_alpha . rare_beta . rare_phylo . rarexpected_fun . ser_functional . 
Some associated R codes: directionalSAC.R . rao_permuted.R . rare_alpha.R . rare_beta.R . rare_phylo.R . rarexpected_fun.R . ser_functional.R . ser_phylo.R .  Full Rarefy package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

binovisualfields  
Depth-Dependent Binocular Visual Fields Simulation
Simulation and visualization depth-dependent integrated visual fields. Visual fields are measured mo ...
Download / Learn more Package Citations See dependency  
personalized2part  
Two-Part Estimation of Treatment Rules for Semi-Continuous Data
Implements the methodology of Huling, Smith, and Chen (2020) , w ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
GEVcdn  
GEV Conditional Density Estimation Network
Implements a flexible nonlinear modelling framework for nonstationary generalized extreme value anal ...
Download / Learn more Package Citations See dependency  
fastRG  
Sample Generalized Random Dot Product Graphs in Linear Time
Samples generalized random product graphs, a generalization of a broad class of network models. Giv ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA