Other packages > Find by keyword >

RaceID  

Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
View on CRAN: Click here


Download and install RaceID package within the R console
Install from CRAN:
install.packages("RaceID")

Install from Github:
library("remotes")
install_github("cran/RaceID")

Install by package version:
library("remotes")
install_version("RaceID", "0.3.9")



Attach the package and use:
library("RaceID")
Maintained by
Dominic Grün
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-27
Latest Update: 2024-11-24
Description:
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) ). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) ).
How to cite:
Dominic Grün (2018). RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data. R package version 0.3.9, https://cran.r-project.org/web/packages/RaceID. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:21), 0.0.9 (2018-07-27 15:40), 0.1.0 (2018-07-29 15:40), 0.1.1 (2018-08-07 15:40), 0.1.2 (2018-11-13 13:10), 0.1.3 (2019-01-22 16:50), 0.1.4 (2019-09-20 14:40), 0.1.5 (2019-09-22 18:30), 0.1.6 (2019-11-21 11:40), 0.1.7 (2020-01-13 20:40), 0.1.8 (2020-02-26 13:00), 0.1.9 (2020-04-15 10:30), 0.2.0 (2020-05-20 16:30), 0.2.1 (2020-08-10 19:10), 0.2.2 (2020-10-08 00:40), 0.2.3 (2021-04-08 08:10), 0.2.4 (2022-07-19 21:10), 0.2.5 (2022-08-15 13:30), 0.2.6 (2022-08-19 15:00), 0.2.7 (2022-11-01 15:02), 0.2.8 (2022-11-16 08:20), 0.2.9 (2023-03-01 12:50), 0.3.0 (2023-03-13 13:10), 0.3.1 (2023-07-17 20:40), 0.3.2 (2023-08-10 16:20), 0.3.3 (2023-09-28 12:10), 0.3.4 (2024-01-08 21:00), 0.3.5 (2024-04-04 01:33), 0.3.6 (2024-10-26 20:10), 0.3.7 (2024-11-02 00:20), 0.3.8 (2024-11-05 18:10), 0.3.9 (2024-11-24 23:50), 0.4.0 (2026-02-23 09:50), 0.4.1 (2026-06-12 09:10)
Other packages that cited RaceID R package
View RaceID citation profile
Other R packages that RaceID depends, imports, suggests or enhances
Complete documentation for RaceID
Functions, R codes and Examples using the RaceID R package
Some associated functions: CCcorrect . Ltree . RaceID-package . SCseq . barplotgene . baseLineVar . branchcells . calcAlphaG . calcVar . calcVarFit . cc_genes . cellsfromtree . cleanNN . clustdiffgenes . clustexp . clustheatmap . compMean . compNoise . compTBNoise . compdist . compentropy . compfr . compmedoids . comppvalue . compscore . comptsne . compumap . corrVar . createKnnMatrix . diffNoisyGenes . diffNoisyGenesTB . diffexpnb . diffgenes . extractCounts . filterdata . findoutliers . fitBackVar . fitGammaRt . fitLogVarLogMean . fitNBtb . fitNBtbCl . fractDotPlot . getExpData . getFilteredCounts . getNode . getfdata . getproj . graphCluster . imputeexp . inspectKNN . intestinalData . intestinalDataSmall . lineagegraph . maxNoisyGenes . maxNoisyGenesTB . noiseBaseFit . plotB . plotBackVar . plotDiffNoise . plotExpNoise . plotMV . plotNoiseModel . plotPC . plotPP . plotPT . plotPearsonRes . plotQQ . plotQuantMap . plotRegNB . plotTrProbs . plotUMINoise . plotbackground . plotdiffgenes . plotdiffgenesnb . plotdimsat . plotdistanceratio . plotexpmap . plotfeatmap . plotgraph . plotjaccard . plotlabelsmap . plotlinkpv . plotlinkscore . plotmap . plotmarkergenes . plotoutlierprobs . plotsaturation . plotsensitivity . plotsilhouette . plotspantree . plotsymbolsmap . postfntb . priorfn . projback . projcells . projenrichment . pruneKnn . pseudoTime . quantKnn . rcpp_hello_world . rfcorrect . testPrior . transitionProbs . updateSC . varRegression . violinMarkerPlot . 
Some associated R codes: RaceID.R . RaceID_utils.R . RcppExports.R . StemID.R . StemID_utils.R . VarID_functions.R . cc_genes.R . intestinalData.R . intestinalDataSmall.R .  Full RaceID package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA