Other packages > Find by keyword >

RaceID  

Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
View on CRAN: Click here


Download and install RaceID package within the R console
Install from CRAN:
install.packages("RaceID")

Install from Github:
library("remotes")
install_github("cran/RaceID")

Install by package version:
library("remotes")
install_version("RaceID", "0.3.9")



Attach the package and use:
library("RaceID")
Maintained by
Dominic Grün
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-27
Latest Update: 2024-11-24
Description:
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) ). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) ).
How to cite:
Dominic Grün (2018). RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data. R package version 0.3.9, https://cran.r-project.org/web/packages/RaceID. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.0.9 (2018-07-27 15:40), 0.1.0 (2018-07-29 15:40), 0.1.1 (2018-08-07 15:40), 0.1.2 (2018-11-13 13:10), 0.1.3 (2019-01-22 16:50), 0.1.4 (2019-09-20 14:40), 0.1.5 (2019-09-22 18:30), 0.1.6 (2019-11-21 11:40), 0.1.7 (2020-01-13 20:40), 0.1.8 (2020-02-26 13:00), 0.1.9 (2020-04-15 10:30), 0.2.0 (2020-05-20 16:30), 0.2.1 (2020-08-10 19:10), 0.2.2 (2020-10-08 00:40), 0.2.3 (2021-04-08 08:10), 0.2.4 (2022-07-19 21:10), 0.2.5 (2022-08-15 13:30), 0.2.6 (2022-08-19 15:00), 0.2.7 (2022-11-01 15:02), 0.2.8 (2022-11-16 08:20), 0.2.9 (2023-03-01 12:50), 0.3.0 (2023-03-13 13:10), 0.3.1 (2023-07-17 20:40), 0.3.2 (2023-08-10 16:20), 0.3.3 (2023-09-28 12:10), 0.3.4 (2024-01-08 21:00), 0.3.5 (2024-04-04 01:33), 0.3.6 (2024-10-26 20:10), 0.3.7 (2024-11-02 00:20), 0.3.8 (2024-11-05 18:10), 0.3.9 (2024-11-24 23:50), 0.4.0 (2026-02-23 09:50), 0.4.1 (2026-06-12 09:10)
Other packages that cited RaceID R package
View RaceID citation profile
Other R packages that RaceID depends, imports, suggests or enhances
Complete documentation for RaceID
Functions, R codes and Examples using the RaceID R package
Some associated functions: CCcorrect . Ltree . RaceID-package . SCseq . barplotgene . baseLineVar . branchcells . calcAlphaG . calcVar . calcVarFit . cc_genes . cellsfromtree . cleanNN . clustdiffgenes . clustexp . clustheatmap . compMean . compNoise . compTBNoise . compdist . compentropy . compfr . compmedoids . comppvalue . compscore . comptsne . compumap . corrVar . createKnnMatrix . diffNoisyGenes . diffNoisyGenesTB . diffexpnb . diffgenes . extractCounts . filterdata . findoutliers . fitBackVar . fitGammaRt . fitLogVarLogMean . fitNBtb . fitNBtbCl . fractDotPlot . getExpData . getFilteredCounts . getNode . getfdata . getproj . graphCluster . imputeexp . inspectKNN . intestinalData . intestinalDataSmall . lineagegraph . maxNoisyGenes . maxNoisyGenesTB . noiseBaseFit . plotB . plotBackVar . plotDiffNoise . plotExpNoise . plotMV . plotNoiseModel . plotPC . plotPP . plotPT . plotPearsonRes . plotQQ . plotQuantMap . plotRegNB . plotTrProbs . plotUMINoise . plotbackground . plotdiffgenes . plotdiffgenesnb . plotdimsat . plotdistanceratio . plotexpmap . plotfeatmap . plotgraph . plotjaccard . plotlabelsmap . plotlinkpv . plotlinkscore . plotmap . plotmarkergenes . plotoutlierprobs . plotsaturation . plotsensitivity . plotsilhouette . plotspantree . plotsymbolsmap . postfntb . priorfn . projback . projcells . projenrichment . pruneKnn . pseudoTime . quantKnn . rcpp_hello_world . rfcorrect . testPrior . transitionProbs . updateSC . varRegression . violinMarkerPlot . 
Some associated R codes: RaceID.R . RaceID_utils.R . RcppExports.R . StemID.R . StemID_utils.R . VarID_functions.R . cc_genes.R . intestinalData.R . intestinalDataSmall.R .  Full RaceID package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA