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RRphylo  

Phylogenetic Ridge Regression Methods for Comparative Studies
View on CRAN: Click here


Download and install RRphylo package within the R console
Install from CRAN:
install.packages("RRphylo")

Install from Github:
library("remotes")
install_github("cran/RRphylo")

Install by package version:
library("remotes")
install_version("RRphylo", "2.8.0")



Attach the package and use:
library("RRphylo")
Maintained by
Pasquale Raia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-04-06
Latest Update: 2023-06-04
Description:
Functions for phylogenetic analysis (Castiglione et al., 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.
How to cite:
Pasquale Raia (2018). RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies. R package version 2.8.0, https://cran.r-project.org/web/packages/RRphylo
Previous versions and publish date:
1.0.0 (2018-04-06 13:37), 2.0.3 (2019-02-25 15:40), 2.4.0 (2020-01-16 12:10), 2.4.4 (2020-03-31 17:40), 2.4.7 (2020-07-14 02:00), 2.4.11 (2020-09-25 18:00), 2.5.0 (2020-12-03 18:30), 2.5.7 (2021-07-16 17:10), 2.5.8 (2021-09-03 14:00), 2.5.9 (2021-11-04 01:10), 2.6.0 (2022-01-20 16:22), 2.6.3 (2022-05-09 10:40), 2.7.0 (2022-08-29 14:40)
Other packages that cited RRphylo R package
View RRphylo citation profile
Other R packages that RRphylo depends, imports, suggests or enhances
Functions, R codes and Examples using the RRphylo R package
Some associated functions: DataApes . DataCetaceans . DataFelids . DataOrnithodirans . DataSimians . DataUng . PGLS_fossil . RRphylo-defunct . RRphylo-deprecated . RRphylo-package . RRphylo . StableTraitsR . angle.matrix . conv.map . cutPhylo . distNodes . evo.dir . fix.poly . getGenus . getMommy . getSis . lollipoPlot . makeFossil . makeL . makeL1 . namesCompare . node.paths . overfitRR . phyloclust . plotConv . plotRates . plotShift . plotTrend . random.evolvability.test . rate.map . rescaleRR . retrieve.angles . scaleTree . search.conv . search.shift . search.trend . setBM . sig2BM . sizedsubtree . swapONE . tips . tree.merger . treeCompare . treedataMatch . 
Some associated R codes: DataApes.R . DataCetaceans.R . DataFelids.R . DataOrnithodirans.R . DataSimians.R . DataUng.R . PGLS_fossil.R . RRphylo-defunct.R . RRphylo-deprecated.R . RRphylo-package.R . RRphylo.R . StableTraitsR.R . angle.matrix.R . auxilliary.functions.R . conv.map.R . cutPhylo.R . distNodes.R . evo.dir.R . fix.poly.R . geiger_functions.R . getGenus.R . getMommy.R . getSis.R . lollipoPlot.R . makeFossil.R . makeL.R . makeL1.R . namesCompare.R . node.paths.R . overfitRR.R . phyloclust.R . plotConv.R . plotRates.R . plotShift.R . plotTrend.R . random.evolvability.test.R . rate.map.R . rescaleRR.R . retrieve.angles.R . scaleTree.R . search.conv.R . search.shift.R . search.trend.R . setBM.R . sizedsubtree.R . swap.phylo.R . swapONE.R . tree.merger.R . treeCompare.R .  Full RRphylo package functions and examples
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