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RPatternJoin  

String Similarity Joins for Hamming and Levenshtein Distances
View on CRAN: Click here


Download and install RPatternJoin package within the R console
Install from CRAN:
install.packages("RPatternJoin")

Install from Github:
library("remotes")
install_github("cran/RPatternJoin")

Install by package version:
library("remotes")
install_version("RPatternJoin", "1.0.0")



Attach the package and use:
library("RPatternJoin")
Maintained by
Daniil Matveev
[Scholar Profile | Author Map]
First Published: 2024-10-25
Latest Update: 2024-10-25
Description:
This project is a tool for words edit similarity joins (a.k.a. all-pairs similarity search) under small (< 3) edit distance constraints. It works for Levenshtein/Hamming distances and words from any alphabet. The software was originally developed for joining amino-acid/nucleotide sequences from Adaptive Immune Repertoires, where the number of words is relatively large (10^5-10^6) and the average length of words is relatively small (10-100).
How to cite:
Daniil Matveev (2024). RPatternJoin: String Similarity Joins for Hamming and Levenshtein Distances. R package version 1.0.0, https://cran.r-project.org/web/packages/RPatternJoin. Accessed 21 Feb. 2025.
Previous versions and publish date:
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