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RNeXML  

Semantically Rich I/O for the 'NeXML' Format
View on CRAN: Click here


Download and install RNeXML package within the R console
Install from CRAN:
install.packages("RNeXML")

Install from Github:
library("remotes")
install_github("cran/RNeXML")

Install by package version:
library("remotes")
install_version("RNeXML", "2.4.11")



Attach the package and use:
library("RNeXML")
Maintained by
Carl Boettiger
[Scholar Profile | Author Map]
First Published: 2014-07-18
Latest Update: 2023-02-01
Description:
Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.
How to cite:
Carl Boettiger (2014). RNeXML: Semantically Rich I/O for the 'NeXML' Format. R package version 2.4.11, https://cran.r-project.org/web/packages/RNeXML. Accessed 26 Mar. 2025.
Previous versions and publish date:
1.1-0 (2014-07-18 00:22), 1.1.2 (2014-07-19 09:21), 1.1.3 (2014-08-06 07:20), 2.0.0 (2014-12-06 07:21), 2.0.1 (2014-12-26 08:35), 2.0.2 (2015-05-01 09:28), 2.0.3 (2015-05-27 02:06), 2.0.4 (2015-10-14 09:48), 2.0.5 (2015-12-31 00:04), 2.0.6 (2016-03-07 22:35), 2.0.7 (2016-06-28 23:36), 2.0.8 (2017-11-17 14:30), 2.1.0 (2018-05-05 00:43), 2.1.1 (2018-05-07 09:55), 2.1.2 (2018-08-13 13:30), 2.2.0 (2018-11-01 22:50), 2.3.0 (2019-01-24 10:10), 2.4.0 (2019-11-08 19:20), 2.4.2 (2020-01-29 10:20), 2.4.3 (2020-03-01 06:50), 2.4.4 (2020-05-10 09:20), 2.4.5 (2020-06-18 20:40), 2.4.6 (2022-02-09 01:30), 2.4.7 (2022-05-13 11:00), 2.4.8 (2022-10-20 00:27), 2.4.9 (2022-12-16 21:00), 2.4.10 (2023-01-09 19:40)
Other packages that cited RNeXML R package
View RNeXML citation profile
Other R packages that RNeXML depends, imports, suggests or enhances
Complete documentation for RNeXML
Functions, R codes and Examples using the RNeXML R package
Some associated functions: Annotated-class . New . add_basic_meta . add_characters . add_meta . add_namespaces . add_trees . c-meta . c-nexml-method . charzero_as_empty . coalesce_ . constructors . dot-callGeneric . dot-methodWithNext . dot-sigLabel . expand_prefix . findNextMethod . flatten_multiphylo . get_all_meta . get_characters . get_characters_list . get_citation . get_flat_trees . get_level . get_license . get_meta . get_metadata . get_metadata_values . get_namespaces . get_rdf . get_taxa . get_taxa_list . get_taxa_meta . get_taxa_meta_list . get_trees . get_trees_list . lcapply . meta . nexml-class . nexml_add . nexml_figshare . nexml_get . nexml_publish . nexml_read . nexml_validate . nexml_write . reset_id_counter . simmap_to_nexml . slot-ResourceMeta-method . summary-nexml-method . taxize_nexml . toPhylo . 
Some associated R codes: S4-utils.R . add_basic_meta.R . add_characters.R . add_meta.R . add_namespaces.R . add_trees.R . character_classes.R . classes.R . concatenate_nexml.R . constructors.R . deprecated.R . get_basic_metadata.R . get_characters.R . get_level.R . get_metadata.R . get_namespaces.R . get_rdf.R . get_taxa.R . get_taxa_meta.R . get_trees.R . internal_get_node_maps.R . internal_isEmpty.R . internal_name_by_id.R . internal_nexml_id.R . meta.R . nexmlTree.R . nexml_add.R . nexml_get.R . nexml_methods.R . nexml_publish.R . nexml_read.R . nexml_validate.R . nexml_write.R . prefixed-uris.R . simmap.R . taxize_nexml.R . tbl_df.R . utils.R .  Full RNeXML package functions and examples
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