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RNAsmc
View on CRAN: Click
here
Download and install RNAsmc package within the R console
Install from CRAN:
install.packages("RNAsmc")
Install from Github:
library("remotes")
install_github("cran/RNAsmc")
Install by package version:
library("remotes")
install_version("RNAsmc", "0.8.0")
Attach the package and use:
library("RNAsmc")
Maintained by
Zheng HeWei
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-23
Latest Update: 2023-01-12
Description:
Provides function for RNA secondary structure plotting, comparison and module mining. Given a RNA secondary structure, you can obtain stem regions, hairpin loops, internal loops, bulge loops and multibranch loops of this RNA structure using this program. They are the basic modules of RNA secondary structure. For each module you get, you can use this program to label the RNA structure with a specific color. You can also use this program to compare two RNA secondary structures to get a score that represents similarity. Reference: Reuter JS, Mathews DH (2010) .
How to cite:
Zheng HeWei (2017). RNAsmc: RNA Secondary Structure Module Mining, Comparison and Plotting. R package version 0.8.0, https://cran.r-project.org/web/packages/RNAsmc. Accessed 18 Feb. 2025.
Previous versions and publish date:
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Other R packages that RNAsmc depends,
imports, suggests or enhances
Functions, R codes and Examples using
the RNAsmc R package
Some associated functions:
Some associated R codes: RNAcirPlot.R . RNAstrCluster.R . RNAstrPlot.R . bulgeLoopsPlot.R . bulge_loop.R . ct2dot.R . externalLoopsPlot.R . external_loop.R . getScore.R . hairpinLoopsPlot.R . hairpin_loop.R . internalLoopsPlot.R . internal_loop.R . multiBranchLoopsPlot.R . multi_branch_loop.R . stem.R . stemPlot.R . strCompare.R . strComparePlot.R . Full RNAsmc package functions and examples
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