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RHybridFinder
View on CRAN: Click
here
Download and install RHybridFinder package within the R console
Install from CRAN:
install.packages("RHybridFinder")
Install from Github:
library("remotes")
install_github("cran/RHybridFinder")
Install by package version:
library("remotes")
install_version("RHybridFinder", "0.2.0")
Attach the package and use:
library("RHybridFinder")
Maintained by
Frederic Saab
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.RHybridFinder . RHybridFinder results . RHybridFinder.pdf . RHybridFinder . RHybridFinder_0.2.0.tar.gz . RHybridFinder_0.2.0.zip . RHybridFinder_0.2.0.zip . RHybridFinder_0.2.0.zip . RHybridFinder_0.2.0.tgz . RHybridFinder_0.2.0.tgz . RHybridFinder_0.2.0.tgz . RHybridFinder_0.2.0.tgz . RHybridFinder_0.2.0.tgz . RHybridFinder_0.2.0.tgz . RHybridFinder archive . https://CRAN.R-project.org/package=RHybridFinder .
First Published: 2021-06-21
Latest Update: 2021-08-17
Description:
Tool for the analysis Mass Spectrometry (MS) data in the context of
immunopeptidomic analysis for the identification of hybrid
peptides and the predictions of binding affinity of all peptides
using 'netMHCpan' while providing a summary
of the netMHCpan output. 'RHybridFinder' (RHF) is destined for
researchers who are looking to analyze their MS data for the purpose
of identification of potential spliced peptides. This package,
developed mainly in base R, is based on the workflow published by
Faridi et al. in 2018 .
How to cite:
Frederic Saab (2021). RHybridFinder: Identification of Hybrid Peptides in Immunopeptidomic Analyses. R package version 0.2.0, https://cran.r-project.org/web/packages/RHybridFinder. Accessed 26 Mar. 2025.
Previous versions and publish date:
0.1.0 (2021-06-21 08:10)
Other packages that cited RHybridFinder R package
View RHybridFinder citation profile
Other R packages that RHybridFinder depends,
imports, suggests or enhances
Complete documentation for RHybridFinder
Functions, R codes and Examples using
the RHybridFinder R package
Some associated functions: HybridFinder . checknetMHCpan . db_Human_Liver_AUTD17 . db_rerun_Human_Liver_AUTD17 . denovo_Human_Liver_AUTD17 . export_checknetmhcpan_results . export_results . export_step2_results . mhc_check . netmhcpan_list_alleles . step2_wo_netMHCpan .
Some associated R codes: HybridFinder.R . checknetMHCpan.R . cis_parallel.R . convert_cis_positions_list_into_df.R . create_spliced_non_cis_peptides.R . create_spliced_peptides.R . create_tmp_directory.R . db_Human_Liver_AUTD17.R . db_rerun_Human_liver_AUTD17.R . denovo_Human_Liver_AUTD17.R . export_HybridFinder_results.R . export_checknetmhcpan_results.R . export_step2_results.R . find_cis_spliced_peptides.R . find_cis_spliced_peptides_parallel.R . find_cis_start_positions.R . find_linear_peptides.R . find_linear_peptides_parallel.R . find_trans_spliced_peptides.R . find_trans_spliced_peptides_parallel.R . get_detailed_cis_positions.R . linear_parallel.R . load_data_for_checking_examples.R . make_fake_HF_proteins.R . mhc_check.R . netmhcpan_call.R . netmhcpan_list_alleles.R . peptide_rerun_cleanup.R . prepare_input_for_HF.R . read_nmhcp_file.R . search_for_cis_spliced_peptides.R . search_for_linear_peptides.R . search_for_trans_spliced_peptides.R . step2_wo_netMHCpan.R . trans_parallel.R . Full RHybridFinder package functions and examples
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