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RHybridFinder  

Identification of Hybrid Peptides in Immunopeptidomic Analyses
View on CRAN: Click here


Download and install RHybridFinder package within the R console
Install from CRAN:
install.packages("RHybridFinder")

Install from Github:
library("remotes")
install_github("cran/RHybridFinder")

Install by package version:
library("remotes")
install_version("RHybridFinder", "0.2.0")



Attach the package and use:
library("RHybridFinder")
Maintained by
Frederic Saab
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-21
Latest Update: 2021-08-17
Description:
Tool for the analysis Mass Spectrometry (MS) data in the context of immunopeptidomic analysis for the identification of hybrid peptides and the predictions of binding affinity of all peptides using 'netMHCpan' <doi:10.1093/nar/gkaa379> while providing a summary of the netMHCpan output. 'RHybridFinder' (RHF) is destined for researchers who are looking to analyze their MS data for the purpose of identification of potential spliced peptides. This package, developed mainly in base R, is based on the workflow published by Faridi et al. in 2018 <doi:10.1126/sciimmunol.aar3947>.
How to cite:
Frederic Saab (2021). RHybridFinder: Identification of Hybrid Peptides in Immunopeptidomic Analyses. R package version 0.2.0, https://cran.r-project.org/web/packages/RHybridFinder
Previous versions and publish date:
0.1.0 (2021-06-21 08:10)
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