Other packages > Find by keyword >

REddyProc  

Post Processing of (Half-)Hourly Eddy-Covariance Measurements
View on CRAN: Click here


Download and install REddyProc package within the R console
Install from CRAN:
install.packages("REddyProc")

Install from Github:
library("remotes")
install_github("cran/REddyProc")

Install by package version:
library("remotes")
install_version("REddyProc", "1.3.3")



Attach the package and use:
library("REddyProc")
Maintained by
Thomas Wutzler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-18
Latest Update: 2022-03-09
Description:
Standard and extensible Eddy-Covariance data post-processing (Wutzler et al. (2018) <doi:10.5194/bg-15-5015-2018>) includes uStar-filtering, gap-filling, and flux-partitioning. The Eddy-Covariance (EC)micrometeorological technique quantifies continuous exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere. It is important for understanding ecosystem dynamics and upscaling exchange fluxes. (Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>). This package inputs pre-processed (half-)hourly data and supports further processing. First, a quality-check and filtering is performed based on the relationship between measured flux and friction velocity (uStar) to discard biased data (Papale et al. (2006) <doi:10.5194/bg-3-571-2006>). Second, gaps in the data are filled based on information from environmental conditions (Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>). Third, the net flux of carbon dioxide is partitioned into its gross fluxes in and out of the ecosystem by night-time based and day-time based approaches (Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
How to cite:
Thomas Wutzler (2018). REddyProc: Post Processing of (Half-)Hourly Eddy-Covariance Measurements. R package version 1.3.3, https://cran.r-project.org/web/packages/REddyProc
Previous versions and publish date:
1.1.2 (2018-01-18 14:28), 1.1.3 (2018-01-19 19:27), 1.1.4 (2018-05-05 15:05), 1.1.5 (2018-05-17 19:37), 1.1 (2018-01-09 15:12), 1.2.1 (2020-03-17 14:20), 1.2.2 (2020-03-18 08:00), 1.2 (2019-03-30 17:30), 1.3.0 (2021-10-14 11:10), 1.3.1 (2021-12-01 15:10), 1.3.2 (2022-03-09 13:00)
Other packages that cited REddyProc R package
View REddyProc citation profile
Other R packages that REddyProc depends, imports, suggests or enhances
Functions, R codes and Examples using the REddyProc R package
Some associated functions: BerkeleyJulianDateToPOSIXct . DEGebExample . Example_DETha98 . LightResponseCurveFitter-class . LightResponseCurveFitter . LightResponseCurveFitter_computeCost . LightResponseCurveFitter_computeLRCGradient . LightResponseCurveFitter_fitLRC . LightResponseCurveFitter_getOptimizedParameterPositions . LightResponseCurveFitter_getParameterInitials . LightResponseCurveFitter_getParameterNames . LightResponseCurveFitter_getPriorLocation . LightResponseCurveFitter_getPriorScale . LightResponseCurveFitter_isParameterInBounds . LightResponseCurveFitter_optimLRC . LightResponseCurveFitter_optimLRCBounds . LightResponseCurveFitter_optimLRCOnAdjustedPrior . LightResponseCurveFitter_predictGPP . LightResponseCurveFitter_predictLRC . LogisticSigmoidLRCFitter-class . LogisticSigmoidLRCFitter . LogisticSigmoidLRCFitter_predictGPP . NonrectangularLRCFitter-class . NonrectangularLRCFitter . NonrectangularLRCFitter_getParameterNames . NonrectangularLRCFitter_predictGPP . POSIXctToBerkeleyJulianDate . REddyProc-package . REddyProc_defaultunits . RHLightResponseCostC . RectangularLRCFitter-class . RectangularLRCFitter . RectangularLRCFitterCVersion-class . RectangularLRCFitterCVersion . RectangularLRCFitter_predictGPP . estimate_vpd_from_dew . extract_FN15 . fCalcAVPfromVMFandPress . fCalcETfromLE . fCalcExtRadiation . fCalcPotRadiation . fCalcRHfromAVPandTair . fCalcSVPfromTair . fCalcVPDfromRHandTair . fCheckHHTimeSeries . fConvertCtoK . fConvertGlobalToVisible . fConvertKtoC . fConvertTimeToPosix . fConvertVisibleWm2toPhotons . fLloydTaylor . fLoadAmeriflux22 . fLoadEuroFlux16 . fLoadFluxnet15 . fLoadTXTIntoDataframe . fWriteDataframeToFile . filterLongRuns . filterLongRunsInVector . getAmerifluxToBGC05VariableNameMapping . getBGC05ToAmerifluxVariableNameMapping . getExamplePath . getFilledExampleDETha98Data . getREddyProcExampleDir . getTZone . get_timestep_hours . globalDummyVars . partGLControl . partGLControlLasslopCompatible . partGLExtractStandardData . partitionNEEGL . pipe . read_from_ameriflux22 . read_from_fluxnet15 . renameVariablesInDataframe . sEddyProc-class . sEddyProc . sEddyProc_initialize . sEddyProc_sApplyUStarScen . sEddyProc_sCalcPotRadiation . sEddyProc_sEstUstarThold . sEddyProc_sEstUstarThreshold . sEddyProc_sEstUstarThresholdDistribution . sEddyProc_sEstimateUstarScenarios . sEddyProc_sExportData . sEddyProc_sExportResults . sEddyProc_sFillInit . sEddyProc_sFillLUT . sEddyProc_sFillMDC . sEddyProc_sFillVPDFromDew . sEddyProc_sGLFluxPartition . sEddyProc_sGLFluxPartitionUStarScens . sEddyProc_sGetData . sEddyProc_sGetEstimatedUstarThresholdDistribution . sEddyProc_sGetUstarScenarios . sEddyProc_sGetUstarSuffixes . sEddyProc_sMDSGapFill . sEddyProc_sMDSGapFillAfterUStarDistr . sEddyProc_sMDSGapFillAfterUstar . sEddyProc_sMDSGapFillUStarScens . sEddyProc_sMRFluxPartition . sEddyProc_sMRFluxPartitionUStarScens . sEddyProc_sPlotDailySums . sEddyProc_sPlotDailySumsY . sEddyProc_sPlotDiurnalCycle . sEddyProc_sPlotFingerprint . sEddyProc_sPlotFingerprintY . sEddyProc_sPlotHHFluxes . sEddyProc_sPlotHHFluxesY . sEddyProc_sPlotNEEVersusUStarForSeason . sEddyProc_sSetLocationInfo . sEddyProc_sSetUStarSeasons . sEddyProc_sSetUstarScenarios . sEddyProc_sTKFluxPartition . sEddyProc_sTKFluxPartitionUStarScens . sEddyProc_update_ustarthreshold_columns . sEddyProc_useAnnualUStarThresholds . sEddyProc_useSeaonsalUStarThresholds . usControlUstarEst . usControlUstarSubsetting . usCreateSeasonFactorMonth . usCreateSeasonFactorMonthWithinYear . usCreateSeasonFactorYday . usCreateSeasonFactorYdayYear . usEstUstarThreshold . usEstUstarThresholdSingleFw1Binned . usEstUstarThresholdSingleFw2Binned . usGetAnnualSeasonUStarMap . usGetSeasonalSeasonUStarMap . usGetYearOfSeason . 
Some associated R codes: CheckVal.R . DataFunctions.R . EddyGapfilling.R . EddyPartitioning.R . EddyPlotting.R . EddyUStarFilterChangePointDetection.R . EddyUStarFilterDP.R . Example.R . FileHandling.R . FileHandlingFormats.R . GeoFunctions.R . LRC_base.R . LRC_logisticSigmoid.R . LRC_nonrectangular.R . LRC_rectangular.R . PartitioningLasslop10.R . PartitioningLasslop10Nighttime.R . RcppExports.R . aEddy.R . estimate_vpd_from_dew.R . imports.R . logitnorm.R . variableNames.R . zzzDebugCode.R .  Full REddyProc package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

lgarch  
Simulation and Estimation of Log-GARCH Models
Simulation and estimation of univariate and multivariate log-GARCH models. The main functions of the ...
Download / Learn more Package Citations See dependency  
Deriv  
Symbolic Differentiation
R-based solution for symbolic differentiation. It admits user-defined function as well as function s ...
Download / Learn more Package Citations See dependency  
bulletr  
Algorithms for Matching Bullet Lands
Analyze bullet lands using nonparametric methods. We provide a reading routine for x3p files (see &l ...
Download / Learn more Package Citations See dependency  
buildr  
Organize & Run Build Scripts Comfortably
Working with reproducible reports or any other similar projects often require to run the script that ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

22,086

R Packages

187,731

Dependencies

55,244

Author Associations

22,087

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns