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REFT  

Root Exudate Feature Toolkit
View on CRAN: Click here


Download and install REFT package within the R console
Install from CRAN:
install.packages("REFT")

Install from Github:
library("remotes")
install_github("cran/REFT")

Install by package version:
library("remotes")
install_version("REFT", "0.1.4")



Attach the package and use:
library("REFT")
Maintained by
Guozhen Gao
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-05-19
Latest Update: 2026-05-19
Description:
Provides tools for molecule-oriented and reaction-centred analysis of root exudate datasets. It supports structural matching based on 'PubChem', calculation of molecular descriptors, and inference of candidate microbe-associated metabolic reactions using Kyoto Encyclopedia of Genes and Genomes ('KEGG') identifiers and Enzyme Commission ('EC') numbers. For background on these databases, see Kanehisa et al. (2023) <doi:10.1093/nar/gkac963> and Kim et al. (2023) <doi:10.1093/nar/gkac956>.
How to cite:
Guozhen Gao (2026). REFT: Root Exudate Feature Toolkit. R package version 0.1.4, https://cran.r-project.org/web/packages/REFT. Accessed 07 Jun. 2026.
Previous versions and publish date:
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Complete documentation for REFT
Functions, R codes and Examples using the REFT R package
Full REFT package functions and examples
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