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RCircos
View on CRAN: Click
here
Download and install RCircos package within the R console
Install from CRAN:
install.packages("RCircos")
Install from Github:
library("remotes")
install_github("cran/RCircos")
Install by package version:
library("remotes")
install_version("RCircos", "1.2.2")
Attach the package and use:
library("RCircos")
Maintained by
Hongen Zhang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-03-01
Latest Update: 2021-12-19
Description:
A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
How to cite:
Hongen Zhang (2013). RCircos: Circos 2D Track Plot. R package version 1.2.2, https://cran.r-project.org/web/packages/RCircos
Previous versions and publish date:
Other packages that cited RCircos R package
View RCircos citation profile
Other R packages that RCircos depends,
imports, suggests or enhances
Functions, R codes and Examples using
the RCircos R package
Some associated functions: RCircos-package . RCircos.Adjust.Scatter.Values . RCircos.Area.Highlight . RCircos.Area.Plot . RCircos.Chromosome.Ideogram.Plot . RCircos.Clear.Track . RCircos.Clear.Zoom.Area . RCircos.Customized.Connection.Plot . RCircos.Customized.Shape.Plot . RCircos.Data.Point . RCircos.Env . RCircos.Gene.Connector.Plot . RCircos.Gene.Label.Data . RCircos.Gene.Name.Plot . RCircos.Get.Arrow.Shape . RCircos.Get.Chromosome.Order . RCircos.Get.Core.Components . RCircos.Get.Data.Point.Height . RCircos.Get.Default.Parameters . RCircos.Get.Gene.Label.Locations . RCircos.Get.Gene.Name.Plot.Parameters . RCircos.Get.Heatmap.Color.Scale.Location . RCircos.Get.Heatmap.Color.Scale . RCircos.Get.Heatmap.Data.Colors . RCircos.Get.Link.Colors . RCircos.Get.Paired.Points.Positions . RCircos.Get.Plot.Boundary . RCircos.Get.Plot.Colors . RCircos.Get.Plot.Layers . RCircos.Get.Polygon.Height . RCircos.Get.Single.Point.Positions . RCircos.Get.Start.End.Locations . RCircos.Get.Track.Positions . RCircos.Get.Zoom.Data . RCircos.Get.Zoom.Range . RCircos.Heatmap.Data . RCircos.Heatmap.Plot . RCircos.Histogram.Data . RCircos.Histogram.Plot . RCircos.Initialize.Plot.Parameters . RCircos.Line.Data . RCircos.Line.Plot . RCircos.Link.Data . RCircos.Link.Line . RCircos.Link.Plot . RCircos.List.Plot.Parameters . RCircos.Mouse.Expr.Data . RCircos.Multiple.Species.Core.Components . RCircos.Multiple.Species.Dataset . RCircos.Parallel.Line.Plot . RCircos.Plot.Heatmap.Color.Scale . RCircos.Point.Plot . RCircos.Polygon.Data . RCircos.Polygon.Plot . RCircos.Pseudo.Ideogram.From.Labels . RCircos.Pseudo.Ideogram.From.Table . RCircos.Rat.Expr.Data . RCircos.Reset.Core.Components . RCircos.Ribbon.Data . RCircos.Ribbon.Plot . RCircos.Scatter.Data . RCircos.Scatter.Plot . RCircos.Set.Base.Plot.Positions . RCircos.Set.Core.Components . RCircos.Set.Cytoband.Data . RCircos.Set.Plot.Area . RCircos.Set.Zoom.Plot.Positions . RCircos.Sort.Genomic.Data . RCircos.Tile.Data . RCircos.Tile.Plot . RCircos.Track.Outline . RCircos.Validate.Cyto.Info . RCircos.Validate.Genomic.Data . RCircos.Validate.Genomic.Info . RCircos.Validate.Plot.Parameters . RCircos.Validate.Track.Positions . RCircos.Vertical.Line.Plot . RCircos.Workflow . RCircos.Zoom.Area.Outline . RCircos.Zoom.Paired.Plot.Positions . RCircos.Zoom.Single.Plot.Positions . RCircos.ZoomIn.Chromosome . RCircos.ZoomIn.Plot . RCircos.ZoomOut.Chromosome . RCircos.defaultBasePerUnits . RCircos.defaultCharWidth . RCircos.defaultChromPadding . RCircos.defaultCircosUnits . RCircos.defaultTextSize . RCircos.heatmapColors . RCircos.paddingConst . RCircos.plotTypes . UCSC.Baylor.3.4.Rat.cytoBandIdeogram . UCSC.HG19.Human.CytoBandIdeogram . UCSC.HG38.Human.CytoBandIdeogram . UCSC.Mouse.GRCm38.CytoBandIdeogram .
Some associated R codes: RCircosChromosomeIdeogram.R . RCircosGenomicData.R . RCircosHeatmap.R . RCircosMain.R . RCircosPlotDataTracks.R . RCircosPlotParameters.R . RCircosPlotPositions.R . RCircosZoomPlot.R . Full RCircos package functions and examples
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