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RCNA
View on CRAN: Click
here
Download and install RCNA package within the R console
Install from CRAN:
install.packages("RCNA")
Install from Github:
library("remotes")
install_github("cran/RCNA")
Install by package version:
library("remotes")
install_version("RCNA", "1.0")
Attach the package and use:
library("RCNA")
Maintained by
Matt Bradley
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.RCNA . RCNA results . RCNA.pdf . Detecting Copy Number Variation on Targeted Exon Sequencing with RCNA . RCNA_1.0.tar.gz . RCNA_1.0.zip . RCNA_1.0.zip . RCNA_1.0.zip . RCNA_1.0.tgz . RCNA_1.0.tgz . RCNA_1.0.tgz . RCNA_1.0.tgz . RCNA_1.0.tgz . RCNA_1.0.tgz . https://CRAN.R-project.org/package=RCNA .
First Published: 2024-12-03
Latest Update: 2024-12-03
Description:
Detects copy number alteration events in targeted exon sequencing data for tumor samples without matched normal controls. The advantage of this method is that it can be applied to smaller sequencing panels including evaluations of exon, transcript, gene, or even user specified genetic regions of interest. Functions in the package include steps for GC-content correction, calculation of quantile based normal karyotype ranges, and calculation of feature score.Cutoffs for "normal" quantile and score are user-adjustable.
How to cite:
Matt Bradley (2024). RCNA: Robust Copy Number Alteration Detection (RCNA). R package version 1.0, https://cran.r-project.org/web/packages/RCNA. Accessed 21 Feb. 2025.
Previous versions and publish date:
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