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Quartet
View on CRAN: Click
here
Download and install Quartet package within the R console
Install from CRAN:
install.packages("Quartet")
Install from Github:
library("remotes")
install_github("cran/Quartet")
Install by package version:
library("remotes")
install_version("Quartet", "1.2.7")
Attach the package and use:
library("Quartet")
Maintained by
Martin R. Smith
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.Quartet . https://github.com/ms609/Quartet/issues/ . https://ms609.github.io/Quartet/ . https://github.com/ms609/Quartet/ . Quartet citation info . Quartet results . Quartet.pdf . Getting started with Quartet . Quartet_1.2.7.tar.gz . Quartet_1.2.7.zip . Quartet_1.2.7.zip . Quartet_1.2.7.zip . Quartet_1.2.7.tgz . Quartet_1.2.7.tgz . Quartet_1.2.7.tgz . Quartet_1.2.7.tgz . Quartet archive . https://CRAN.R-project.org/package=Quartet .
First Published: 2019-01-16
Latest Update: 2024-02-09
Description:
Calculates the number of four-taxon subtrees consistent with a pair
of cladograms, calculating the symmetric quartet distance of Bandelt & Dress
(1986), Reconstructing the shape of a tree from observed dissimilarity data,
Advances in Applied Mathematics, 7, 309-343 ,
and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for
computing the quartet and triplet distances between binary or general trees,
Bioinformatics, 30, 2079
How to cite:
Martin R. Smith (2019). Quartet: Comparison of Phylogenetic Trees Using Quartet and Split Measures. R package version 1.2.7, https://cran.r-project.org/web/packages/Quartet. Accessed 09 Jan. 2025.
Previous versions and publish date:
Other packages that cited Quartet R package
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Other R packages that Quartet depends,
imports, suggests or enhances
Complete documentation for Quartet
Functions, R codes and Examples using
the Quartet R package
Some associated functions: AllQuartets . CompareQuartets . CompareQuartetsMulti . CompareSplits . Distances . PairSharedQuartetStatus . PairSharedSplitStatus . PlotQuartet . Quartet-package . QuartetPoints . QuartetState . QuartetStatus . ResolvedQuartets . SimilarityMetrics . SplitStatus . SymmetricDifferenceLineEnds . TQDist . TQFile . ValidateQuartetFile . VisualizeQuartets . dot-AddSlice . dot-CheckSize . dot-NormalizeStatus . dot-StatusToMatrix . sq_trees . tqdist_QuartetDistance .
Some associated R codes: CompareQuartets.R . Metrics.R . PartitionDistance.R . Quartet-package.R . QuartetDistance.R . RcppExports.R . ResolvedQuartets.R . TernaryPoints.R . VisualizeQuartets.R . data.R . zzz.R . Full Quartet package functions and examples
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