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QuICSeedR  

Analyze Data for Fluorophore-Assisted Seed Amplification Assays
View on CRAN: Click here


Download and install QuICSeedR package within the R console
Install from CRAN:
install.packages("QuICSeedR")

Install from Github:
library("remotes")
install_github("cran/QuICSeedR")

Install by package version:
library("remotes")
install_version("QuICSeedR", "0.1.2")



Attach the package and use:
library("QuICSeedR")
Maintained by
Manci Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-02
Latest Update: 2024-09-02
Description:
A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) <doi:10.1099/vir.0.069906-0>, Li et al. (2020) <doi:10.1038/s41598-021-96127-8>, Rowden et al. (2023) <doi:10.3390/pathogens12020309>, Haley et al. (2013) <doi:10.1371/journal.pone.0081488>, and Mair and Wilcox (2020) <doi:10.3758/s13428-019-01246-w>. Please refer to the original publications for details.
How to cite:
Manci Li (2024). QuICSeedR: Analyze Data for Fluorophore-Assisted Seed Amplification Assays. R package version 0.1.2, https://cran.r-project.org/web/packages/QuICSeedR. Accessed 21 Aug. 2026.
Previous versions and publish date:
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Functions, R codes and Examples using the QuICSeedR R package
Full QuICSeedR package functions and examples
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