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PubMedMining  

Text-Mining of the 'PubMed' Repository
View on CRAN: Click here


Download and install PubMedMining package within the R console
Install from CRAN:
install.packages("PubMedMining")

Install from Github:
library("remotes")
install_github("cran/PubMedMining")

Install by package version:
library("remotes")
install_version("PubMedMining", "1.0.0")



Attach the package and use:
library("PubMedMining")
Maintained by
Jeff DIDIER
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-16
Latest Update: 2020-11-16
Description:
Easy function for text-mining the 'PubMed' repository based on defined sets of terms. The relationship between fix-terms (related to your research topic) and pub-terms (terms which pivot around your research focus) is calculated using the pointwise mutual information algorithm ('PMI'). Church, Kenneth Ward and Hanks, Patrick (1990) A text file is generated with the 'PMI'-scores for each fix-term. Then for each collocation pairs (a fix-term + a pub-term), a text file is generated with related article titles and publishing years. Additional Author section will follow in the next version updates.
How to cite:
Jeff DIDIER (2020). PubMedMining: Text-Mining of the 'PubMed' Repository. R package version 1.0.0, https://cran.r-project.org/web/packages/PubMedMining. Accessed 05 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited PubMedMining R package
View PubMedMining citation profile
Other R packages that PubMedMining depends, imports, suggests or enhances
Complete documentation for PubMedMining
Functions, R codes and Examples using the PubMedMining R package
Some associated functions: pubmed_textmining . 
Some associated R codes: text-mining.R .  Full PubMedMining package functions and examples
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