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ProActive  

Detect Elevations and Gaps in Mapped Sequencing Read Coverage
View on CRAN: Click here


Download and install ProActive package within the R console
Install from CRAN:
install.packages("ProActive")

Install from Github:
library("remotes")
install_github("cran/ProActive")

Install by package version:
library("remotes")
install_version("ProActive", "0.1.0")



Attach the package and use:
library("ProActive")
Maintained by
Jessie Maier
[Scholar Profile | Author Map]
First Published: 2025-01-20
Latest Update: 2025-01-20
Description:
Automate the detection of gaps and elevations in mapped sequencing read coverage using a 2D pattern-matching algorithm. 'ProActive' detects, characterizes and visualizes read coverage patterns in both genomes and metagenomes. Optionally, users may provide gene predictions associated with their genome or metagenome in the form of a .gff file. In this case, 'ProActive' will generate an additional output table containing the gene predictions found within the detected regions of gapped and elevated read coverage.
How to cite:
Jessie Maier (2025). ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage. R package version 0.1.0, https://cran.r-project.org/web/packages/ProActive. Accessed 17 Feb. 2025.
Previous versions and publish date:
0.0.2 (2025-01-14 10:50)
Other packages that cited ProActive R package
View ProActive citation profile
Other R packages that ProActive depends, imports, suggests or enhances
Complete documentation for ProActive
Functions, R codes and Examples using the ProActive R package
Full ProActive package functions and examples
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