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PressPurt
View on CRAN: Click
here
Download and install PressPurt package within the R console
Install from CRAN:
install.packages("PressPurt")
Install from Github:
library("remotes")
install_github("cran/PressPurt")
Install by package version:
library("remotes")
install_version("PressPurt", "1.0.2")
Attach the package and use:
library("PressPurt")
Maintained by
David Koslicki
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-19
Latest Update: 2020-10-19
Description:
This is a computational package designed to identify the most sensitive interactions within a network which must be estimated most accurately in order to produce qualitatively robust predictions to a press perturbation. This is accomplished by enumerating the number of sign switches (and their magnitude) in the net effects matrix when an edge experiences uncertainty. The package produces data and visualizations when uncertainty is associated to one or more edges in the network and according to a variety of distributions. The software requires the network to be described by a system of differential equations but only requires as input a numerical Jacobian matrix evaluated at an equilibrium point. This package is based on Koslicki, D., & Novak, M. (2017) .
How to cite:
David Koslicki (2020). PressPurt: Indeterminacy of Networks via Press Perturbations. R package version 1.0.2, https://cran.r-project.org/web/packages/PressPurt
Previous versions and publish date:
No previous versions
Other packages that cited PressPurt R package
View PressPurt citation profile
Other R packages that PressPurt depends,
imports, suggests or enhances
Functions, R codes and Examples using
the PressPurt R package
Some associated functions: ComputeEntryWisePerturbationExpectation . ComputeMultiEntryPerturbationExpectation . GenerateEntryWiseFigures . PreprocessMatrix . create_conda_env . create_virtual_env . find_python . get_distributions_single . ns_to_step . process_data . py_depend . set_python_conda . set_python_virtual .
Some associated R codes: ComputeEntryWisePerturbationExpectation.R . ComputeMultiEntryPerturbationExpectation.R . GenerateEntryWiseFigures.R . PreprocessMatrix.R . helper_funcs.R . zzz.R . Full PressPurt package functions and examples
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