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PoolTestR
View on CRAN: Click
here
Download and install PoolTestR package within the R console
Install from CRAN:
install.packages("PoolTestR")
Install from Github:
library("remotes")
install_github("cran/PoolTestR")
Install by package version:
library("remotes")
install_version("PoolTestR", "0.2.0")
Attach the package and use:
library("PoolTestR")
Maintained by
Angus McLure
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-08
Latest Update: 2022-07-01
Description:
An easy-to-use tool for working with presence/absence tests on 'pooled'
or 'grouped' samples. The primary application is for estimating prevalence of
a marker in a population based on the results of tests on pooled specimens.
This sampling method is often employed in surveillance of rare conditions in
humans or animals (e.g. molecular xenomonitoring). The package was initially
conceived as an R-based alternative to the molecular xenomonitoring software,
'PoolScreen' . However, it goes
further, allowing for estimates of prevalence to be adjusted for hierarchical
sampling frames, and perform flexible mixed-effect regression analyses
(McLure et al. Environmental Modelling and Software.
). The package is currently in early stages,
however more features are planned or in the works: e.g. adjustments for
imperfect test specificity/sensitivity, functions for helping with optimal
experimental design, and functions for spatial modelling.
How to cite:
Angus McLure (2021). PoolTestR: Prevalence and Regression for Pool-Tested (Group-Tested) Data. R package version 0.2.0, https://cran.r-project.org/web/packages/PoolTestR. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Complete documentation for PoolTestR
Functions, R codes and Examples using
the PoolTestR R package
Some associated functions: ExampleData . HierPoolPrev . PoolLink . PoolPrev . PoolReg . PoolRegBayes . PoolTestR-package . SimpleExampleData . TruePrev . getPrevalence .
Some associated R codes: ExampleData.R . HierPoolPrev.R . PoolLink.R . PoolPrev.R . PoolReg.R . PoolRegBayes.R . PoolTestR-package.R . SimpleExampleData.R . TruePrev.R . getPrevalence.R . stanmodels.R . Full PoolTestR package functions and examples
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