Other packages > Find by keyword >

PoolTestR  

Prevalence and Regression for Pool-Tested (Group-Tested) Data
View on CRAN: Click here


Download and install PoolTestR package within the R console
Install from CRAN:
install.packages("PoolTestR")

Install from Github:
library("remotes")
install_github("cran/PoolTestR")

Install by package version:
library("remotes")
install_version("PoolTestR", "0.2.0")



Attach the package and use:
library("PoolTestR")
Maintained by
Angus McLure
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-08
Latest Update: 2022-07-01
Description:
An easy-to-use tool for working with presence/absence tests on 'pooled' or 'grouped' samples. The primary application is for estimating prevalence of a marker in a population based on the results of tests on pooled specimens. This sampling method is often employed in surveillance of rare conditions in humans or animals (e.g. molecular xenomonitoring). The package was initially conceived as an R-based alternative to the molecular xenomonitoring software, 'PoolScreen' . However, it goes further, allowing for estimates of prevalence to be adjusted for hierarchical sampling frames, and perform flexible mixed-effect regression analyses (McLure et al. Environmental Modelling and Software. ). The package is currently in early stages, however more features are planned or in the works: e.g. adjustments for imperfect test specificity/sensitivity, functions for helping with optimal experimental design, and functions for spatial modelling.
How to cite:
Angus McLure (2021). PoolTestR: Prevalence and Regression for Pool-Tested (Group-Tested) Data. R package version 0.2.0, https://cran.r-project.org/web/packages/PoolTestR. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2021-02-08 12:00), 0.1.1 (2021-02-15 06:50), 0.1.2 (2022-01-19 01:22), 0.1.3 (2022-07-01 09:30)
Other packages that cited PoolTestR R package
View PoolTestR citation profile
Other R packages that PoolTestR depends, imports, suggests or enhances
Complete documentation for PoolTestR
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA