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PlateVision  

Automated qPCR Analysis and Visual Quality Control
View on CRAN: Click here


Download and install PlateVision package within the R console
Install from CRAN:
install.packages("PlateVision")

Install from Github:
library("remotes")
install_github("cran/PlateVision")

Install by package version:
library("remotes")
install_version("PlateVision", "0.1.0")



Attach the package and use:
library("PlateVision")
Maintained by
Shubham Love
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-12-22
Latest Update: 2025-12-22
Description:
Directly pipes raw quantitative PCR (qPCR) machine outputs into downstream analyses using the comparative Ct (Delta-Delta Ct) method described by Livak and Schmittgen (2001) <doi:10.1006/meth.2001.1262>. Streamlines the workflow from 'Excel' export to publication-ready plots. Integrates unique visual quality control by reconstructing 96-well plate heatmaps, allowing users to instantly detect pipetting errors, edge effects, and outliers. Key features include automated error propagation, laboratory master mix calculations, and generation of bar charts and volcano plots.
How to cite:
Shubham Love (2025). PlateVision: Automated qPCR Analysis and Visual Quality Control. R package version 0.1.0, https://cran.r-project.org/web/packages/PlateVision. Accessed 21 Aug. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for PlateVision
Functions, R codes and Examples using the PlateVision R package
Full PlateVision package functions and examples
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