Other packages > Find by keyword >

Plasmidprofiler  

Visualization of Plasmid Profile Results
View on CRAN: Click here


Download and install Plasmidprofiler package within the R console
Install from CRAN:
install.packages("Plasmidprofiler")

Install from Github:
library("remotes")
install_github("cran/Plasmidprofiler")

Install by package version:
library("remotes")
install_version("Plasmidprofiler", "0.1.6")



Attach the package and use:
library("Plasmidprofiler")
Maintained by
Adrian Zetner
[Scholar Profile | Author Map]
First Published: 2017-01-05
Latest Update: 2017-01-06
Description:
Contains functions developed to combine the results of querying a plasmid database using short-read sequence typing with the results of a blast analysis against the query results.
How to cite:
Adrian Zetner (2017). Plasmidprofiler: Visualization of Plasmid Profile Results. R package version 0.1.6, https://cran.r-project.org/web/packages/Plasmidprofiler. Accessed 05 Apr. 2025.
Previous versions and publish date:
0.1.5 (2017-01-05 10:39)
Other packages that cited Plasmidprofiler R package
View Plasmidprofiler citation profile
Other R packages that Plasmidprofiler depends, imports, suggests or enhances
Complete documentation for Plasmidprofiler
Functions, R codes and Examples using the Plasmidprofiler R package
Some associated functions: amr_positives . amr_presence . blast_parser . blastdata . combine_results . create_grob . create_plotly . define_colours . file_cacher . main . minmax . normalize . order_report . plot_heatmap . read_blast . read_srst2 . report . save_files . srst2data . subsampler . tree_maker . zetner_score . 
Some associated R codes: data.R . graphics_related.R . main_aux.R . parse_related.R . report_related.R . zzz.R .  Full Plasmidprofiler package functions and examples
Downloads during the last 30 days
03/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/3003/3104/0104/0204/03Downloads for Plasmidprofiler0123456789101112TrendBars

Today's Hot Picks in Authors and Packages

leapp  
Latent Effect Adjustment After Primary Projection
These functions take a gene expression value matrix, a primary covariate vector, an additional know ...
Download / Learn more Package Citations See dependency  
gllvm  
Generalized Linear Latent Variable Models
Analysis of multivariate data using generalized linear latent variable models (gllvm). Estimation i ...
Download / Learn more Package Citations See dependency  
deepdive  
Deep Learning for General Purpose
Aims to provide simple intuitive functions to create quick prototypes of artificial neural network o ...
Download / Learn more Package Citations See dependency  
IGST  
Informative Gene Selection Tool
Mining informative genes with certain biological meanings are important for clinical diagnosis of di ...
Download / Learn more Package Citations See dependency  
whitestrap  
White Test and Bootstrapped White Test for Heteroskedasticity
Formal implementation of White test of heteroskedasticity and a bootstrapped version of it, develope ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

23,990

R Packages

207,311

Dependencies

64,809

Author Associations

23,991

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA