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Plasmidprofiler  

Visualization of Plasmid Profile Results
View on CRAN: Click here


Download and install Plasmidprofiler package within the R console
Install from CRAN:
install.packages("Plasmidprofiler")

Install from Github:
library("remotes")
install_github("cran/Plasmidprofiler")

Install by package version:
library("remotes")
install_version("Plasmidprofiler", "0.1.6")



Attach the package and use:
library("Plasmidprofiler")
Maintained by
Adrian Zetner
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-05
Latest Update: 2017-01-06
Description:
Contains functions developed to combine the results of querying a plasmid database using short-read sequence typing with the results of a blast analysis against the query results.
How to cite:
Adrian Zetner (2017). Plasmidprofiler: Visualization of Plasmid Profile Results. R package version 0.1.6, https://cran.r-project.org/web/packages/Plasmidprofiler
Previous versions and publish date:
0.1.5 (2017-01-05 10:39)
Other packages that cited Plasmidprofiler R package
View Plasmidprofiler citation profile
Other R packages that Plasmidprofiler depends, imports, suggests or enhances
Functions, R codes and Examples using the Plasmidprofiler R package
Some associated functions: amr_positives . amr_presence . blast_parser . blastdata . combine_results . create_grob . create_plotly . define_colours . file_cacher . main . minmax . normalize . order_report . plot_heatmap . read_blast . read_srst2 . report . save_files . srst2data . subsampler . tree_maker . zetner_score . 
Some associated R codes: data.R . graphics_related.R . main_aux.R . parse_related.R . report_related.R . zzz.R .  Full Plasmidprofiler package functions and examples
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