Other packages > Find by keyword >

PlasmaMutationDetector2  

Tumor Mutation Detection in Plasma using Barcoding
View on CRAN: Click here


Download and install PlasmaMutationDetector2 package within the R console
Install from CRAN:
install.packages("PlasmaMutationDetector2")

Install from Github:
library("remotes")
install_github("cran/PlasmaMutationDetector2")

Install by package version:
library("remotes")
install_version("PlasmaMutationDetector2", "1.1.11")



Attach the package and use:
library("PlasmaMutationDetector2")
Maintained by
Rozenholc
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-05-03
Latest Update:
Description:
Aims at detecting single nucleotide variation (SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used as a surrogate marker for tumor, at each base position of an Next Generation Sequencing (NGS) analysis using barcoding. Mutations are assessed by comparing the minor-allele frequency at each position to the measured PER in control samples. This package has been used for Kjersti Tjensvoll, Morten Lapin, Bj
How to cite:
Rozenholc (2022). PlasmaMutationDetector2: Tumor Mutation Detection in Plasma using Barcoding. R package version 1.1.11, https://cran.r-project.org/web/packages/PlasmaMutationDetector2. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.1.11 (2022-05-03 12:00)
Other packages that cited PlasmaMutationDetector2 R package
View PlasmaMutationDetector2 citation profile
Other R packages that PlasmaMutationDetector2 depends, imports, suggests or enhances
Complete documentation for PlasmaMutationDetector2
Functions, R codes and Examples using the PlasmaMutationDetector2 R package
Some associated functions: BuildCtrlErrorRate . DetectPlasmaMutation . LoadBackgroundErrorRate . MAF_from_BAM . PrepareLibrary . background_error_rate . hotspot . positions_ranges . 
Some associated R codes: functions_1.1.10.R .  Full PlasmaMutationDetector2 package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA