Other packages > Find by keyword >

PlasmaMutationDetector  

Tumor Mutation Detection in Plasma
View on CRAN: Click here


Download and install PlasmaMutationDetector package within the R console
Install from CRAN:
install.packages("PlasmaMutationDetector")

Install from Github:
library("remotes")
install_github("cran/PlasmaMutationDetector")

Install by package version:
library("remotes")
install_version("PlasmaMutationDetector", "1.7.2")



Attach the package and use:
library("PlasmaMutationDetector")
Maintained by
Yves Rozenholc
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-09-09
Latest Update: 2018-06-11
Description:
Aims at detecting single nucleotide variation (SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used as a surrogate marker for tumor, at each base position of an Next Generation Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele frequency at each position to the measured PER in control samples.
How to cite:
Yves Rozenholc (2016). PlasmaMutationDetector: Tumor Mutation Detection in Plasma. R package version 1.7.2, https://cran.r-project.org/web/packages/PlasmaMutationDetector. Accessed 28 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:17), 1.5.2 (2016-09-09 10:13), 1.6.2 (2017-11-15 14:30), 1.6.10 (2018-01-26 20:53), 1.7.0 (2018-04-27 00:50), 1.7.1 (2018-05-16 05:32)
Other packages that cited PlasmaMutationDetector R package
View PlasmaMutationDetector citation profile
Other R packages that PlasmaMutationDetector depends, imports, suggests or enhances
Complete documentation for PlasmaMutationDetector
Functions, R codes and Examples using the PlasmaMutationDetector R package
Some associated functions: BuildCtrlErrorRate . DetectPlasmaMutation . LoadBackgroundErrorRate . MAF_from_BAM . PrepareLibrary . background_error_rate . hotspot . positions_ranges . 
Some associated R codes: functions.R .  Full PlasmaMutationDetector package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

mxnorm  
Apply Normalization Methods to Multiplexed Images
Implements methods to normalize multiplexed imaging data, including statistical metrics and visuali ...
Download / Learn more Package Citations See dependency  
survivalMPLdc  
Penalised Likelihood for Survival Analysis with Dependent Censoring
Fitting Cox proportional hazard model under dependent right censoring using copula and maximum penal ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
RGIFT  
Create Quizzes in GIFT Format
Implementation of some functions to create quizzes in the GIFT format. This format is used by sever ...
Download / Learn more Package Citations See dependency  
spatialCovariance  
Computation of Spatial Covariance Matrices for Data on Rectangles
Functions that compute the spatial covariance matrix for the matern and power classes of spatial mod ...
Download / Learn more Package Citations See dependency  
shinyFeedback  
Display User Feedback in Shiny Apps
Easily display user feedback in Shiny apps. ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA