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PlasmaMutationDetector  

Tumor Mutation Detection in Plasma
View on CRAN: Click here


Download and install PlasmaMutationDetector package within the R console
Install from CRAN:
install.packages("PlasmaMutationDetector")

Install from Github:
library("remotes")
install_github("cran/PlasmaMutationDetector")

Install by package version:
library("remotes")
install_version("PlasmaMutationDetector", "1.7.2")



Attach the package and use:
library("PlasmaMutationDetector")
Maintained by
Yves Rozenholc
[Scholar Profile | Author Map]
First Published: 2016-09-09
Latest Update: 2018-06-11
Description:
Aims at detecting single nucleotide variation (SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used as a surrogate marker for tumor, at each base position of an Next Generation Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele frequency at each position to the measured PER in control samples.
How to cite:
Yves Rozenholc (2016). PlasmaMutationDetector: Tumor Mutation Detection in Plasma. R package version 1.7.2, https://cran.r-project.org/web/packages/PlasmaMutationDetector. Accessed 07 Apr. 2025.
Previous versions and publish date:
1.5.2 (2016-09-09 10:13), 1.6.2 (2017-11-15 14:30), 1.6.10 (2018-01-26 20:53), 1.7.0 (2018-04-27 00:50), 1.7.1 (2018-05-16 05:32)
Other packages that cited PlasmaMutationDetector R package
View PlasmaMutationDetector citation profile
Other R packages that PlasmaMutationDetector depends, imports, suggests or enhances
Complete documentation for PlasmaMutationDetector
Functions, R codes and Examples using the PlasmaMutationDetector R package
Some associated functions: BuildCtrlErrorRate . DetectPlasmaMutation . LoadBackgroundErrorRate . MAF_from_BAM . PrepareLibrary . background_error_rate . hotspot . positions_ranges . 
Some associated R codes: functions.R .  Full PlasmaMutationDetector package functions and examples
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