R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
PhenotypeSimulator
View on CRAN: Click
here
Download and install PhenotypeSimulator package within the R console
Install from CRAN:
install.packages("PhenotypeSimulator")
Install from Github:
library("remotes")
install_github("cran/PhenotypeSimulator") Install by package version:
library("remotes")
install_version("PhenotypeSimulator", "0.3.4") Attach the package and use:
library("PhenotypeSimulator")
Maintained by
Hannah Meyer
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-21
Latest Update: 2021-07-16
Description:
Simulation is a critical part of method development and assessment
in quantitative genetics. 'PhenotypeSimulator' allows for the flexible
simulation of phenotypes under different models, including genetic variant
and infinitesimal genetic effects (reflecting population structure) as well
as non-genetic covariate effects, observational noise and additional
correlation effects. The different phenotype components are combined into a
final phenotype while controlling for the proportion of variance explained
by each of the components. For each effect component, the number of
variables, their distribution and the design of their effect across traits
can be customised. For the simulation of the genetic effects, external
genotype data from a number of standard software ('plink', 'hapgen2'/
'impute2', 'genome', 'bimbam', simple text files) can be imported. The final
simulated phenotypes and its components can be automatically saved into .rds
or .csv files. In addition, they can be saved in formats compatible with
commonly used genetic association software ('gemma', 'bimbam', 'plink',
'snptest', 'LiMMBo').
How to cite:
Hannah Meyer (2017). PhenotypeSimulator: Flexible Phenotype Simulation from Different Genetic and Noise Models. R package version 0.3.4, https://cran.r-project.org/web/packages/PhenotypeSimulator. Accessed 25 Jul. 2026.
Previous versions and publish date:
Other packages that cited PhenotypeSimulator R package
View PhenotypeSimulator citation profile
Other R packages that PhenotypeSimulator depends,
imports, suggests or enhances
Complete documentation for PhenotypeSimulator
Functions, R codes and Examples using
the PhenotypeSimulator R package
Some associated functions: PhenotypeSimulator . addNonNulls . commaList2vector . correlatedBgEffects . expGen2probGen . geneticBgEffects . geneticFixedEffects . getAlleleFrequencies . getCausalSNPs . getKinship . noiseBgEffects . noiseFixedEffects . probGen2expGen . readStandardGenotypes . read_lines . rescaleVariance . runSimulation . savePheno . setModel . simulateDist . simulateGenotypes . simulatePhenotypes . standardiseGenotypes . testNumerics . transformNonlinear . vmessage . writeStandardOutput .
Some associated R codes: PhenotypeSimulator.R . RcppExports.R . commandlineFunctions.R . createphenotypeFunctions.R . genotypeFunctions.R . outputFunctions.R . pkg.R . utilityFunctions.R . variancecomponentFunctions.R . Full PhenotypeSimulator package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
UnitStat
A test to understand the stability of the underlying stochastic data. Helps the user’s understand ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ankita Sharma (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
dendroextras
Provides extra functions to manipulate dendrograms
that build on the base functions provided by the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gregory Jefferis (view profile)
lomb
Computes the Lomb-Scargle Periodogram and actogram for evenly or unevenly sampled time series. Inclu ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Thomas Ruf (view profile)
27,987
R Packages
239,283
Dependencies
74,234
Author Associations
27,988
Publication Badges
