Other packages > Find by keyword >

PhenotypeSimulator  

Flexible Phenotype Simulation from Different Genetic and Noise Models
View on CRAN: Click here


Download and install PhenotypeSimulator package within the R console
Install from CRAN:
install.packages("PhenotypeSimulator")

Install from Github:
library("remotes")
install_github("cran/PhenotypeSimulator")

Install by package version:
library("remotes")
install_version("PhenotypeSimulator", "0.3.4")



Attach the package and use:
library("PhenotypeSimulator")
Maintained by
Hannah Meyer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-21
Latest Update: 2021-07-16
Description:
Simulation is a critical part of method development and assessment in quantitative genetics. 'PhenotypeSimulator' allows for the flexible simulation of phenotypes under different models, including genetic variant and infinitesimal genetic effects (reflecting population structure) as well as non-genetic covariate effects, observational noise and additional correlation effects. The different phenotype components are combined into a final phenotype while controlling for the proportion of variance explained by each of the components. For each effect component, the number of variables, their distribution and the design of their effect across traits can be customised. For the simulation of the genetic effects, external genotype data from a number of standard software ('plink', 'hapgen2'/ 'impute2', 'genome', 'bimbam', simple text files) can be imported. The final simulated phenotypes and its components can be automatically saved into .rds or .csv files. In addition, they can be saved in formats compatible with commonly used genetic association software ('gemma', 'bimbam', 'plink', 'snptest', 'LiMMBo').
How to cite:
Hannah Meyer (2017). PhenotypeSimulator: Flexible Phenotype Simulation from Different Genetic and Noise Models. R package version 0.3.4, https://cran.r-project.org/web/packages/PhenotypeSimulator. Accessed 29 Sep. 2026.
Previous versions and publish date:
(2026-07-09 08:17), 0.1.1 (2017-05-21 09:02), 0.1.2 (2017-06-12 13:31), 0.1.3 (2017-08-05 19:10), 0.2.0 (2018-01-07 22:42), 0.2.2 (2018-05-13 20:52), 0.3.1 (2018-10-25 18:10), 0.3.3 (2019-05-15 17:40), 0.3.4 (2021-07-16 15:30)
Other packages that cited PhenotypeSimulator R package
View PhenotypeSimulator citation profile
Other R packages that PhenotypeSimulator depends, imports, suggests or enhances
Complete documentation for PhenotypeSimulator
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

PMCMRplus  
Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended
For one-way layout experiments the one-way ANOVA can be performed as an omnibus test. All-pairs mul ...
Download / Learn more Package Citations See dependency  
CopSens  
Copula-Based Sensitivity Analysis for Observational Causal Inference
Implements the copula-based sensitivity analysis method, as discussed in Copula-based Sensitivity A ...
Download / Learn more Package Citations See dependency  
FRESA.CAD  
Feature Selection Algorithms for Computer Aided Diagnosis
Contains a set of utilities for building and testing statistical models (linear, logistic,ordinal or ...
Download / Learn more Package Citations See dependency  
miniMeta  
Web Application to Run Meta-Analyses
Shiny web application to run meta-analyses. Essentially a graphical front-end to package 'meta' for ...
Download / Learn more Package Citations See dependency  
uniswappeR  
Interact with the Uniswap Platform
Routines to interact with the Uniswap trading platform and its API < ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

28,833

R Packages

247,686

Dependencies

76,198

Author Associations

28,834

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA