Other packages > Find by keyword >

PhenotypeSimulator  

Flexible Phenotype Simulation from Different Genetic and Noise Models
View on CRAN: Click here


Download and install PhenotypeSimulator package within the R console
Install from CRAN:
install.packages("PhenotypeSimulator")

Install from Github:
library("remotes")
install_github("cran/PhenotypeSimulator")

Install by package version:
library("remotes")
install_version("PhenotypeSimulator", "0.3.4")



Attach the package and use:
library("PhenotypeSimulator")
Maintained by
Hannah Meyer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-21
Latest Update: 2021-07-16
Description:
Simulation is a critical part of method development and assessment in quantitative genetics. 'PhenotypeSimulator' allows for the flexible simulation of phenotypes under different models, including genetic variant and infinitesimal genetic effects (reflecting population structure) as well as non-genetic covariate effects, observational noise and additional correlation effects. The different phenotype components are combined into a final phenotype while controlling for the proportion of variance explained by each of the components. For each effect component, the number of variables, their distribution and the design of their effect across traits can be customised. For the simulation of the genetic effects, external genotype data from a number of standard software ('plink', 'hapgen2'/ 'impute2', 'genome', 'bimbam', simple text files) can be imported. The final simulated phenotypes and its components can be automatically saved into .rds or .csv files. In addition, they can be saved in formats compatible with commonly used genetic association software ('gemma', 'bimbam', 'plink', 'snptest', 'LiMMBo').
How to cite:
Hannah Meyer (2017). PhenotypeSimulator: Flexible Phenotype Simulation from Different Genetic and Noise Models. R package version 0.3.4, https://cran.r-project.org/web/packages/PhenotypeSimulator
Previous versions and publish date:
0.1.1 (2017-05-21 09:02), 0.1.2 (2017-06-12 13:31), 0.1.3 (2017-08-05 19:10), 0.2.0 (2018-01-07 22:42), 0.2.2 (2018-05-13 20:52), 0.3.1 (2018-10-25 18:10), 0.3.3 (2019-05-15 17:40)
Other packages that cited PhenotypeSimulator R package
View PhenotypeSimulator citation profile
Other R packages that PhenotypeSimulator depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

critpath  
Setting the Critical Path in Project Management
Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation ...
Download / Learn more Package Citations See dependency  
steepness  
Testing Steepness of Dominance Hierarchies
The steepness package computes steepness as a property of dominance hierarchies. Steepness is define ...
Download / Learn more Package Citations See dependency  
rdbnomics  
Download DBnomics Data
R access to hundreds of millions data series from DBnomics API (). ...
Download / Learn more Package Citations See dependency  
mistral  
Methods in Structural Reliability
Various reliability analysis methods for rare event inference (computing failure probability and qua ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
ftaproxim  
Fault Tree Analysis Based on Proxel Simulation
Calculation and plotting of instantaneous unavailabilities of basic events along with the top event ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns