Other packages > Find by keyword >

PheVis  

Automatic Phenotyping of Electronic Health Record at Visit Resolution
View on CRAN: Click here


Download and install PheVis package within the R console
Install from CRAN:
install.packages("PheVis")

Install from Github:
library("remotes")
install_github("cran/PheVis")

Install by package version:
library("remotes")
install_version("PheVis", "1.0.4")



Attach the package and use:
library("PheVis")
Maintained by
Thomas Ferte
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-16
Latest Update: 2023-10-20
Description:
Using Electronic Health Record (EHR) is difficult because most of the time the true characteristic of the patient is not available. Instead we can retrieve the International Classification of Disease code related to the disease of interest or we can count the occurrence of the Unified Medical Language System. None of them is the true phenotype which needs chart review to identify. However chart review is time consuming and costly. 'PheVis' is an algorithm which is phenotyping (i.e identify a characteristic) at the visit level in an unsupervised fashion. It can be used for chronic or acute diseases. An example of how to use 'PheVis' is available in the vignette. Basically there are two functions that are to be used: `train_phevis()` which trains the algorithm and `test_phevis()` which get the predicted probabilities. The detailed method is described in preprint by Fert
How to cite:
Thomas Ferte (2021). PheVis: Automatic Phenotyping of Electronic Health Record at Visit Resolution. R package version 1.0.4, https://cran.r-project.org/web/packages/PheVis. Accessed 26 Jun. 2026.
Previous versions and publish date:
1.0.1 (2021-02-16 10:20), 1.0.2 (2021-02-23 10:40), 1.0.3 (2023-09-21 22:40)
Other packages that cited PheVis R package
View PheVis citation profile
Other R packages that PheVis depends, imports, suggests or enhances
Complete documentation for PheVis
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
poptrend  
Estimate Smooth and Linear Trends from Population Count Survey Data
Functions to estimate and plot smooth or linear population trends, or population indices, from anim ...
Download / Learn more Package Citations See dependency  
colormap  
Color Palettes using Colormaps Node Module
Allows to generate colors from palettes defined in the colormap module of 'Node.js'. (see ...
Download / Learn more Package Citations See dependency  
ggblanket  
Simplify 'ggplot2' Visualisation
Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions. ...
Download / Learn more Package Citations See dependency  
infotheo  
Information-Theoretic Measures
Implements various measures of information theory based on several entropy estimators. ...
Download / Learn more Package Citations See dependency  
tactile  
New and Extended Plots, Methods, and Panel Functions for 'lattice'
Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel f ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA