Other packages > Find by keyword >

PeakSegJoint  

Joint Peak Detection in Several ChIP-Seq Samples
View on CRAN: Click here


Download and install PeakSegJoint package within the R console
Install from CRAN:
install.packages("PeakSegJoint")

Install from Github:
library("remotes")
install_github("cran/PeakSegJoint")

Install by package version:
library("remotes")
install_version("PeakSegJoint", "2024.1.24")



Attach the package and use:
library("PeakSegJoint")
Maintained by
Toby Dylan Hocking
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-16
Latest Update: 2023-04-25
Description:
Jointly segment several ChIP-seq samples to find the peaks which are the same and different across samples. The fast approximate maximum Poisson likelihood algorithm is described in "PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples" by TD Hocking and G Bourque.
How to cite:
Toby Dylan Hocking (2017). PeakSegJoint: Joint Peak Detection in Several ChIP-Seq Samples. R package version 2024.1.24, https://cran.r-project.org/web/packages/PeakSegJoint
Previous versions and publish date:
2017.08.11 (2017-08-16 00:07), 2018.01.09 (2018-10-01 22:50), 2018.10.3 (2018-10-03 23:52), 2022.4.6 (2022-04-07 21:02), 2023.4.24 (2023-04-25 04:20)
Other packages that cited PeakSegJoint R package
View PeakSegJoint citation profile
Other R packages that PeakSegJoint depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

ftaproxim  
Fault Tree Analysis Based on Proxel Simulation
Calculation and plotting of instantaneous unavailabilities of basic events along with the top event ...
Download / Learn more Package Citations See dependency  
steepness  
Testing Steepness of Dominance Hierarchies
The steepness package computes steepness as a property of dominance hierarchies. Steepness is define ...
Download / Learn more Package Citations See dependency  
critpath  
Setting the Critical Path in Project Management
Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation ...
Download / Learn more Package Citations See dependency  
rdbnomics  
Download DBnomics Data
R access to hundreds of millions data series from DBnomics API (). ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
mistral  
Methods in Structural Reliability
Various reliability analysis methods for rare event inference (computing failure probability and qua ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns