Other packages > Find by keyword >

PeakSegJoint  

Joint Peak Detection in Several ChIP-Seq Samples
View on CRAN: Click here


Download and install PeakSegJoint package within the R console
Install from CRAN:
install.packages("PeakSegJoint")

Install from Github:
library("remotes")
install_github("cran/PeakSegJoint")

Install by package version:
library("remotes")
install_version("PeakSegJoint", "2024.12.4")



Attach the package and use:
library("PeakSegJoint")
Maintained by
Toby Dylan Hocking
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-16
Latest Update: 2024-12-04
Description:
Jointly segment several ChIP-seq samples to find the peaks which are the same and different across samples. The fast approximate maximum Poisson likelihood algorithm is described in "PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples" by TD Hocking and G Bourque.
How to cite:
Toby Dylan Hocking (2017). PeakSegJoint: Joint Peak Detection in Several ChIP-Seq Samples. R package version 2024.12.4, https://cran.r-project.org/web/packages/PeakSegJoint. Accessed 12 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:17), 2017.08.11 (2017-08-16 00:07), 2018.01.09 (2018-10-01 22:50), 2018.10.3 (2018-10-03 23:52), 2022.4.6 (2022-04-07 21:02), 2023.4.24 (2023-04-25 04:20), 2024.1.24 (2024-01-24 20:00), 2024.6.27 (2024-06-27 18:10), 2024.10.1 (2024-10-02 06:40)
Other packages that cited PeakSegJoint R package
View PeakSegJoint citation profile
Other R packages that PeakSegJoint depends, imports, suggests or enhances
Complete documentation for PeakSegJoint
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
gwavr  
Get Water Attributes Visually in R
Provides methods to Get Water Attributes Visually in R ('gwavr'). This allows the user to point and ...
Download / Learn more Package Citations See dependency  
cglasso  
Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values
Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate th ...
Download / Learn more Package Citations See dependency  
SLEMI  
Statistical Learning Based Estimation of Mutual Information
The implementation of the algorithm for estimation of mutual information and channel capacity from e ...
Download / Learn more Package Citations See dependency  
ggparliament  
Parliament Plots
Simple parliament plots using 'ggplot2'. Visualize election results as points in the architectural l ...
Download / Learn more Package Citations See dependency  

29,000

R Packages

247,686

Dependencies

76,729

Author Associations

29,001

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA