Other packages > Find by keyword >

PeakSegDP  

Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data
View on CRAN: Click here


Download and install PeakSegDP package within the R console
Install from CRAN:
install.packages("PeakSegDP")

Install from Github:
library("remotes")
install_github("cran/PeakSegDP")

Install by package version:
library("remotes")
install_version("PeakSegDP", "2024.1.24")



Attach the package and use:
library("PeakSegDP")
Maintained by
Toby Dylan Hocking
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-21
Latest Update: 2024-01-24
Description:
A quadratic time dynamic programming algorithm can be used to compute an approximate solution to the problem of finding the most likely changepoints with respect to the Poisson likelihood, subject to a constraint on the number of segments, and the changes which must alternate: up, down, up, down, etc. For more info read "PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data" by TD Hocking et al, proceedings of ICML2015.
How to cite:
Toby Dylan Hocking (2017). PeakSegDP: Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data. R package version 2024.1.24, https://cran.r-project.org/web/packages/PeakSegDP. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:17), 2017.06.20 (2017-06-21 01:23), 2017.08.15 (2017-08-15 23:39)
Other packages that cited PeakSegDP R package
View PeakSegDP citation profile
Other R packages that PeakSegDP depends, imports, suggests or enhances
Complete documentation for PeakSegDP
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA