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PSSMCOOL
View on CRAN: Click
here
Download and install PSSMCOOL package within the R console
Install from CRAN:
install.packages("PSSMCOOL")
Install from Github:
library("remotes")
install_github("cran/PSSMCOOL")
Install by package version:
library("remotes")
install_version("PSSMCOOL", "0.2.4")
Attach the package and use:
library("PSSMCOOL")
Maintained by
Alireza mohammadi
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.PSSMCOOL . https://github.com/BioCool-Lab/PSSMCOOL/issues . https://github.com/BioCool-Lab/PSSMCOOL . PSSMCOOL results . PSSMCOOL.pdf . PSSMCOOL . PSSMCOOL_0.2.4.tar.gz . PSSMCOOL_0.2.4.zip . PSSMCOOL_0.2.4.zip . PSSMCOOL_0.2.4.zip . PSSMCOOL_0.2.4.tgz . PSSMCOOL_0.2.4.tgz . PSSMCOOL_0.2.4.tgz . PSSMCOOL_0.2.4.tgz . PSSMCOOL_0.2.4.tgz . PSSMCOOL_0.2.4.tgz . PSSMCOOL archive . https://CRAN.R-project.org/package=PSSMCOOL .
First Published: 2020-05-08
Latest Update: 2022-01-04
Description:
Returns almost all features that has been extracted from Position Specific
Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length)
and 20 columns produced by 'PSI-BLAST' which is a program to produce
PSSM Matrix from multiple sequence alignment of proteins
see for mor details. some
of these features are described in Zahiri, J., et al.(2013)
,
Saini, H., et al.(2016)
,
Ding, S., et al.(2014)
,
Cheng, C.W., et al.(2008)
,
Juan, E.Y., et al.(2009)
.
How to cite:
Alireza mohammadi (2020). PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM). R package version 0.2.4, https://cran.r-project.org/web/packages/PSSMCOOL. Accessed 11 Apr. 2025.
Previous versions and publish date:
Other packages that cited PSSMCOOL R package
View PSSMCOOL citation profile
Other R packages that PSSMCOOL depends,
imports, suggests or enhances
Complete documentation for PSSMCOOL
Functions, R codes and Examples using
the PSSMCOOL R package
Some associated functions: AATP_TPC . AB_PSSM . Averag_Block . CS_PSe_PSSM . DFMCA_PSSM . DP_PSSM . Discrete_Cosine_Transform . EDP_EEDP_MEDP . FPSSM . FPSSM2 . LPC_PSSM . MBMGACPSSM . PSSMBLOCK . PSSMCOOL-package . PSSM_SD . RPM_PSSM . SOMA_PSSM . SVD_PSSM . aac_pssm . aadp_pssm . consunsus_sequence . disulfid . dpc_pssm . dwt_PSSM . grey_pssm_pseAAC . k_mers . k_separated_bigrams_pssm . kiderafactor . pse_pssm . pssm400 . pssm_ac . pssm_cc . pssm_composition . pssm_seg . rpssm . scsh2 . single_Average . smoothed_PSSM . three_mer . trigrame_pssm .
Some associated R codes: AAC_PSSM.R . AADP_PSSM.R . AATP_TPC.R . AB_PSSM.R . DISSULFID.R . DMACA-PSSM.R . DPC_PSSM.R . DP_PSSM.R . DWTPSSM.R . EDP_EEDP_MEDP.R . FPSSM.R . Grey_PSSM_PseAAC.R . MBMGAC_PSSM.R . PSSM400.R . PSSM_AC.R . PSSM_BLOCK.R . PSSM_CC.R . PSSM_COMPOSITION.R . RPM-PSSM.R . RPSSM.R . SCSH.R . consunsus.R . cs_pssm.R . discrete_cosin.R . k_seperated.R . kiderafactor.R . lpc_pssm.R . pse_pssm.R . pssm_sd.R . single_average.R . smooted_pssm.R . somaPssm.R . svd-pssm.R . trigrame_pssm.R . Full PSSMCOOL package functions and examples
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