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PSSMCOOL  

Features Extracted from Position Specific Scoring Matrix (PSSM)
View on CRAN: Click here


Download and install PSSMCOOL package within the R console
Install from CRAN:
install.packages("PSSMCOOL")

Install from Github:
library("remotes")
install_github("cran/PSSMCOOL")

Install by package version:
library("remotes")
install_version("PSSMCOOL", "0.2.4")



Attach the package and use:
library("PSSMCOOL")
Maintained by
Alireza mohammadi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-08
Latest Update: 2022-01-04
Description:
Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see for mor details. some of these features are described in Zahiri, J., et al.(2013) , Saini, H., et al.(2016) , Ding, S., et al.(2014) , Cheng, C.W., et al.(2008) , Juan, E.Y., et al.(2009) .
How to cite:
Alireza mohammadi (2020). PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM). R package version 0.2.4, https://cran.r-project.org/web/packages/PSSMCOOL. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2020-05-08 21:20), 0.2.0 (2020-08-07 09:50), 0.2.1 (2020-10-25 18:00), 0.2.2 (2021-09-27 12:00), 0.2.3 (2021-12-11 00:40)
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