Other packages > Find by keyword >

PSSMCOOL  

Features Extracted from Position Specific Scoring Matrix (PSSM)
View on CRAN: Click here


Download and install PSSMCOOL package within the R console
Install from CRAN:
install.packages("PSSMCOOL")

Install from Github:
library("remotes")
install_github("cran/PSSMCOOL")

Install by package version:
library("remotes")
install_version("PSSMCOOL", "0.2.4")



Attach the package and use:
library("PSSMCOOL")
Maintained by
Alireza mohammadi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-08
Latest Update: 2022-01-04
Description:
Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see for mor details. some of these features are described in Zahiri, J., et al.(2013) , Saini, H., et al.(2016) , Ding, S., et al.(2014) , Cheng, C.W., et al.(2008) , Juan, E.Y., et al.(2009) .
How to cite:
Alireza mohammadi (2020). PSSMCOOL: Features Extracted from Position Specific Scoring Matrix (PSSM). R package version 0.2.4, https://cran.r-project.org/web/packages/PSSMCOOL. Accessed 11 Jun. 2026.
Previous versions and publish date:
0.1.0 (2020-05-08 21:20), 0.2.0 (2020-08-07 09:50), 0.2.1 (2020-10-25 18:00), 0.2.2 (2021-09-27 12:00), 0.2.3 (2021-12-11 00:40)
Other packages that cited PSSMCOOL R package
View PSSMCOOL citation profile
Other R packages that PSSMCOOL depends, imports, suggests or enhances
Complete documentation for PSSMCOOL
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
clusrank  
Wilcoxon Rank Tests for Clustered Data
Non-parametric tests (Wilcoxon rank sum test and Wilcoxon signed rank test) for clustered data docu ...
Download / Learn more Package Citations See dependency  
Voss  
Generic Voss Algorithm (Random Sequential Additions)
Generating realizations of a fractal Brownian function on uniform 1D & 2D grid with classic and ...
Download / Learn more Package Citations See dependency  
hsphase  
Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
Identification of recombination events, haplotype reconstruction, sire imputation and pedigree recon ...
Download / Learn more Package Citations See dependency  
leontief  
Input-Output Analysis
An implementation of the Input-Output model developed by Wassily Leontief that represents the inter ...
Download / Learn more Package Citations See dependency  
stevedata  
Steve's Toy Data for Teaching About a Variety of Methodological, Social, and Political Topics
This is a collection of various kinds of data with broad uses for teaching. My students, and academ ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA