Other packages > Find by keyword >

PRECAST  

Embedding and Clustering with Alignment for Spatial Omics Datasets
View on CRAN: Click here


Download and install PRECAST package within the R console
Install from CRAN:
install.packages("PRECAST")

Install from Github:
library("remotes")
install_github("cran/PRECAST")

Install by package version:
library("remotes")
install_version("PRECAST", "1.8")



Attach the package and use:
library("PRECAST")
Maintained by
Wei Liu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-22
Latest Update: 2025-03-27
Description:
An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) .
How to cite:
Wei Liu (2022). PRECAST: Embedding and Clustering with Alignment for Spatial Omics Datasets. R package version 1.8, https://cran.r-project.org/web/packages/PRECAST. Accessed 21 Jul. 2026.
Previous versions and publish date:
(2026-07-09 08:16), 1.0 (2022-06-22 21:10), 1.1 (2022-06-29 18:10), 1.2 (2022-07-12 01:30), 1.3 (2022-10-18 15:57), 1.4 (2023-02-11 13:00), 1.5 (2023-03-23 11:00), 1.6.2 (2023-08-09 20:30), 1.6.3 (2023-11-06 06:50), 1.6.4 (2024-01-25 07:00), 1.6.5 (2024-03-19 09:30), 1.6.6 (2025-03-27 16:20), 1.6 (2023-04-18 21:20), 1.7 (2025-10-01 16:50), 1.8 (2025-12-15 10:30)
Other packages that cited PRECAST R package
View PRECAST citation profile
Other R packages that PRECAST depends, imports, suggests or enhances
Complete documentation for PRECAST
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

netgen  
Network Generator for Combinatorial Graph Problems
Methods for the generation of a wide range of network geographies, e.g., grid networks or clustered ...
Download / Learn more Package Citations See dependency  
beastier  
Call 'BEAST2'
'BEAST2' () is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/ ...
Download / Learn more Package Citations See dependency  
OSTE  
Optimal Survival Trees Ensemble
Function for growing survival trees ensemble ('Naz Gul', 'Nosheen Faiz', 'Dan Brawn', 'Rafal Kulakow ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
truncnormbayes  
Estimates Moments for a Truncated Normal Distribution using 'Stan'
Finds the posterior modes for the mean and standard deviation for a truncated normal distribution wi ...
Download / Learn more Package Citations See dependency  
splash  
Simple Process-Led Algorithms for Simulating Habitats
This program calculates bioclimatic indices and fluxes (radiation, evapotranspiration, soil moistur ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA