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PRECAST  

Embedding and Clustering with Alignment for Spatial Omics Datasets
View on CRAN: Click here


Download and install PRECAST package within the R console
Install from CRAN:
install.packages("PRECAST")

Install from Github:
library("remotes")
install_github("cran/PRECAST")

Install by package version:
library("remotes")
install_version("PRECAST", "1.9")



Attach the package and use:
library("PRECAST")
Maintained by
Wei Liu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-06-22
Latest Update: 2025-03-27
Description:
An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) .
How to cite:
Wei Liu (2022). PRECAST: Embedding and Clustering with Alignment for Spatial Omics Datasets. R package version 1.9, https://cran.r-project.org/web/packages/PRECAST. Accessed 03 Nov. 2026.
Previous versions and publish date:
(2026-07-09 08:16), 1.0 (2022-06-22 21:10), 1.1 (2022-06-29 18:10), 1.2 (2022-07-12 01:30), 1.3 (2022-10-18 15:57), 1.4 (2023-02-11 13:00), 1.5 (2023-03-23 11:00), 1.6.2 (2023-08-09 20:30), 1.6.3 (2023-11-06 06:50), 1.6.4 (2024-01-25 07:00), 1.6.5 (2024-03-19 09:30), 1.6.6 (2025-03-27 16:20), 1.6 (2023-04-18 21:20), 1.7 (2025-10-01 16:50), 1.8 (2025-12-15 10:30)
Other packages that cited PRECAST R package
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Complete documentation for PRECAST
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