Other packages > Find by keyword >

POUMM  

The Phylogenetic Ornstein-Uhlenbeck Mixed Model
View on CRAN: Click here


Download and install POUMM package within the R console
Install from CRAN:
install.packages("POUMM")

Install from Github:
library("remotes")
install_github("cran/POUMM")

Install by package version:
library("remotes")
install_version("POUMM", "2.1.7")



Attach the package and use:
library("POUMM")
Maintained by
Venelin Mitov
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-03-11
Latest Update: 2020-10-27
Description:
The Phylogenetic Ornstein-Uhlenbeck Mixed Model (POUMM) allows to estimate the phylogenetic heritability of continuous traits, to test hypotheses of neutral evolution versus stabilizing selection, to quantify the strength of stabilizing selection, to estimate measurement error and to make predictions about the evolution of a phenotype and phenotypic variation in a population. The package implements combined maximum likelihood and Bayesian inference of the univariate Phylogenetic Ornstein-Uhlenbeck Mixed Model, fast parallel likelihood calculation, maximum likelihood inference of the genotypic values at the tips, functions for summarizing and plotting traces and posterior samples, functions for simulation of a univariate continuous trait evolution model along a phylogenetic tree. So far, the package has been used for estimating the heritability of quantitative traits in macroevolutionary and epidemiological studies, see e.g. Bertels et al. (2017) and Mitov and Stadler (2018) . The algorithm for parallel POUMM likelihood calculation has been published in Mitov and Stadler (2019) .
How to cite:
Venelin Mitov (2017). POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model. R package version 2.1.7, https://cran.r-project.org/web/packages/POUMM. Accessed 31 Jan. 2025.
Previous versions and publish date:
1.2.1 (2017-03-11 09:18), 1.2.2 (2017-03-27 15:57), 1.3.0 (2017-06-16 01:06), 1.3.2 (2017-07-02 16:23), 2.1.2 (2018-11-15 18:20), 2.1.5 (2019-03-27 13:20), 2.1.6 (2019-12-05 11:50)
Other packages that cited POUMM R package
View POUMM citation profile
Other R packages that POUMM depends, imports, suggests or enhances
Complete documentation for POUMM
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
nlpred  
Estimators of Non-Linear Cross-Validated Risks Optimized for Small Samples
Methods for obtaining improved estimates of non-linear cross-validated risks are obtained using targ ...
Download / Learn more Package Citations See dependency  
pim  
Fit Probabilistic Index Models
Fit a probabilistic index model as described in Thas et al, 2012: ...
Download / Learn more Package Citations See dependency  
GEEmediate  
Mediation Analysis for Generalized Linear Models Using the Difference Method
Causal mediation analysis for a single exposure/treatment and a single mediator, both allowed to be ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,581

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA